ViewGene

Locus Name:
GeneID:
Location:

GeneID:35
TrivialName: PA14_55690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55690
PAO1 Ortholog Locus:PA4285
Sequence Length:3516
Protein Length:1171
Start: 4972156
Stop: 4968641
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07673.1|AE004844_5 (AE004844) exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PAO1]
Identities = 1163/1171 (99%), Positives = 1164/1171 (99%)
Sequence:
ATGCCAGAACCCTTGGGAACCACCGCCCTCACGCCCGGATTCATGATCGTCCACGGCAATCGCCTGGACGAC
CTGCGCGACCTCGCCGTTTCCTGGATGCGCCGCTATCCGCTGGCGCCGCTGGAAAGCGAGCGGGTCCTGGTG
CACAGCAACGGCATCGCCCAATGGTTGAAGCTGGCATTGGCCGAAGATCCCCGCGAGGACGGTGGCGGCGGT
GGCGGCATCGCCGCGGCGCTGGAGGTGCAGTTGCCGGCGCAGTTCCTCTGGCAGGCCTATCGCGCGGTGCTG
GGCCGCGAAAGCATTCCCGAGGTTTCCGAACTGGACAAGGCGCCGCTGACCTGGCGCCTGATGCGTCTGCTT
CCCGGATTGCTGGAGCGTCCCGAGTTCCGCACCCTGCAACGTTTCCTCGCCGACGATGCCGACCTGCGCAAG
CGTCATCAACTGGCCGAGCGCCTGGCCGACCTGTTCGACCAGTACCAGGTCTATCGCGGCGACTGGCTCGAC
GACTGGAGCCAGGGCCGCGACCAGTTGCGCACGGCGAACGGGCAGGCGCGCCCGCTCGGTGCCGACGAGCGC
TGGCAGGCCGAATTGTGGCGCGCGCTGCTCGCCGACGTCGGTGCCGATAGCCTGGCCCGCAGCCGCTCCGGC
GTGCACCGGCGCTTCATCGAGGCGCTGCGCTTCGCCAGCGCGGCGCCGCGCGCGTTGCCGCGACGAGTAGTG
GTGTTCGGGATTTCCTCGATGCCGGCGCAGACCCTCGAGGCGCTGGCCGCCCTGGCCAGGTTCAGCCAGGTG
CTGCTCTGCGTGCACAACCCCTGTCGCCACCACTGGGCCGACATCGTCGCCGACAAGGACCTGTTGCGCCAC
GAGTACCGCCGCCAGCAGCGCCGCGCCGGCGTCCCCGCCGACCTCGACGAGGACCGCCAGCACCAGCATGCC
CAGCCGTTGCTGGCGGCCTGGGGCAAGCAGGGCCGCGACTACATCAACCTGCTCGACAGCTACGACGACCCG
GACAGCTATCGGAACCTGTTCGGCGAGGTCAACGGCGGGCGCATCGACCTGTTCAGCGAGGAGGCCCCGCAC
GGGCTGCTCGGCCAGTTGCAGGACGATATCCTCGAACTGCGCCCGTTGGCGGAAACCCGCGAGCACTGGCCG
CCGGTGGCGCCGCGGAGCGACGCCTCGATCCGCTTCCATGTGGCCCACAGCGCGCAGCGCGAAGTGGAGATC
CTCCACGACCAGTTGCTCGCCCGCTTCAACGCCGATCCGAGCCTGAAGCCGCGCGACGTGATCGTCATGGTC
CCCGACATCAACGCCTACGCGCCGCACATCGAGGCGGTGTTCGGCCAGGTGCCGCGCGACGACCAGCGCTTC
ATTCCCTATACCCTGGCCGACCAGGGACAGCGCGGTCGCGAGCCGCTGCTGATCGCCCTGGAGCACCTGCTG
AAACTGCCCGACAGCCGTTTCGCCGTGAGCGAGATCCTCGACCTGCTGGACGTCCCGGCATTGCGCCGGCGT
TTCGGCGTCGACGAGGCCGACCTGGCGACCCTGCACCGCTGGATCGAAGGCGCCGGCGTGCGCTGGGGGCTG
GATGCCGCGCAGCGCGAGCGTCTCGGCCTGCCAGCGGGGCTGGAGGGCAACAGTTGGCGCTTCGGTCTGCGG
CGCATGCTGCTCGGCTACGCGGTCGGCGAAGGTGCGGCCCTGCAAGGCATCCAGCCCTACGATGAGGTCGGT
GGCCTGGACGCCGCCCTCGCAGGCCCGCTGGCTGTGCTGCTGGAGCGCCTCGAGGTGGCCTACGCCGAGCTG
GCCGAACCGGCCACCCCGGCGCAGTGGGGCGAGCGCCTGCAGGCCCTGCTCACGGTGTTCTTCGAGGCCCAC
GACGAGCGCGACGAACTGCTTCTCACCCAGCTTCTGCAATTGCTCGAACGCTGGCAGGAACACTGCGCCTGT
GCGGCCTTCGCCGAGCCGCTGCCGATCAGCGTGATACGCGAGGCCTGGCTCGGCGGCCTGGACCAGGGCGGC
TTGAACCAGCGCTTCCTGGCTGGCGCGGTGAGTTTCTGCACGCTGATGCCGATGCGCGCGATCCCGTTCCGG
CTGGTCTGCCTGCTTGGCATGAACGATGGCGACTACCCCCGCCAGCAGTCGCCGCTGGATTTCGACCTGATG
CGCAACGACTACCGCCCCGGCGACCGCTCGCGGCGCGAGGACGACCGCTACCTGCTGCTCGAGGCGCTGCTC
TCGGCGCGCGAGCAACTCTACGTGAGCTGGGTGGGGCGGAGTATCCGCGACAATGGCGAGCGGCCGCCCTCG
GTGCTGATCGGCCAGTTGCGCGATCACCTGGCGGCCGGCTGGCGCCTGGATCCGGACGGCGACGGCGAGGCG
CTGCTGCGTGCCCTGACCCAGGAGCATCCGCTGCAGCCGTTCAGCCGCCGGTATTTTCACGATGCGCCGGAG
CAGGGCGTCGATGGCCTGTTCACCTACGCCCGCGAGTGGCGCGAGGTCCATCGCGAGGACGAGATCGGCGCT
CCCGACGCCGAAGCGCCCCTGCCGCCGCTGGAACTGGAGGGCGCGCTGGGGCTGCGAGCGCTGGCGGAGTTC
CTCGCCAACCCGGTGAATGCGTTCTTCCAGCAGCGGCTCAAGGTGCGTTTCGACGACGAGCAATTGACCGGC
AACGACGAAGAGCCTTTCGAACTGGACGCGCTGGACAACTGGAAGCTGCAATTCGAGCTGACCGAACGCATG
AAGCGCTGGGTCGAGCGGGACTGGGATGCCGAGGGCCTGCCGGCGCAGTTGCAGGCCCAGGTCGAGCGACTG
CGGCGACAGGGTCGCCTGCCGCTGGCGGCGTTCGGCGAGTTCTCCGCGCGCCATTTGCTGCAACCGCTGCCC
GACCTGCTCTGGCGCTACCGCCAGGAAATCGAGCGCTGGCCGGAGGCGGTCGAGCAGCAGCAGGAGTTGCGC
CATCGCCATTCGTCCGGGCTGGAGCTGGAGGACTGGCTCGGCGGCTTGCGTCGCGACGCTTCCGGGCGCCTG
GCGCGCCTGCAGTTGCTCAGCGGCAAGCTCCATGAAGGGCGCGGCTTCAAGTGGCACAGCCTGGTGCGCCAC
TGGTTGCAGCACCTCGCCCTGCAACGTCTCGGCCAGCCGGTGAGCAGCGTGCTGGTGAGCCAGACCGGCACC
CTGGAGATTCCGCCGCTGCCGAGCGAGCGCGCCGGCGAGTACCTCGACCAGTTGATCGACGCCTGGCGCCAG
GGCATGCGCCAGCCGTTGCCGGTGGCCTGCCGGACCGCTTTCGCCTGGCTCGCCAGTGGTGGCGCCGCAGAG
CCCGAGAAAGCCATGCGCGAGGCGCGCAAGCGCTACGAGGGAGGGTTCGGCATGGGGGGCGAGGTGGACGCC
TCGCCGGCGCTGGCTCGGGTCTATCCGGACTTCGACCGGCTGCTCGCCAGCGGTGAGTTCGCGCACTGGGCC
GAGCAGCTCTACGCGCCGCTGCTGGCTGCCCTGGGGCGTGGCGCGGAGGAGCAGGCATGA
Translation:
MPEPLGTTALTPGFMIVHGNRLDDLRDLAVSWMRRYPLAPLESERVLVHSNGIAQWLKLALAEDPREDGGGG
GGIAAALEVQLPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRFLADDADLRK
RHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRALLADVGADSLARSRSG
VHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARFSQVLLCVHNPCRHHWADIVADKDLLRH
EYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGKQGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPH
GLLGQLQDDILELRPLAETREHWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMV
PDINAYAPHIEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPALRRR
FGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVGEGAALQGIQPYDEVG
GLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFFEAHDERDELLLTQLLQLLERWQEHCAC
AAFAEPLPISVIREAWLGGLDQGGLNQRFLAGAVSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLM
RNDYRPGDRSRREDDRYLLLEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEA
LLRALTQEHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGAPDAEAPLPPLELEGALGLRALAEF
LANPVNAFFQQRLKVRFDDEQLTGNDEEPFELDALDNWKLQFELTERMKRWVERDWDAEGLPAQLQAQVERL
RRQGRLPLAAFGEFSARHLLQPLPDLLWRYRQEIERWPEAVEQQQELRHRHSSGLELEDWLGGLRRDASGRL
ARLQLLSGKLHEGRGFKWHSLVRHWLQHLALQRLGQPVSSVLVSQTGTLEIPPLPSERAGEYLDQLIDAWRQ
GMRQPLPVACRTAFAWLASGGAAEPEKAMREARKRYEGGFGMGGEVDASPALARVYPDFDRLLASGEFAHWA
EQLYAPLLAALGRGAEEQA*
AnnotationID:45GeneID:35
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 19:07:55
Gene Name:recC
Confidence Code:2
GeneProduct:exodeoxyribonuclease V gamma chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04257,COG1330
Secondary Functional Category(ies):
EC Number:3.1.11.5
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70247.1|AE016664_3 (AE016791) exodeoxyribonuclease V, gamma subunit [Pseudomonas putida
            KT2440]
          Length = 1160

 Score = 1432 bits (3708), Expect = 0.0
 Identities = 743/1166 (63%), Positives = 850/1166 (72%), Gaps = 27/1166 (2%)

>gb|AAO54318.1| (AE016858) exodeoxyribonuclease V, gamma subunit [Pseudomonas
            syringae pv. tomato str. DC3000]
          Length = 1158

 Score = 1413 bits (3658), Expect = 0.0
 Identities = 726/1165 (62%), Positives = 846/1165 (72%), Gaps = 31/1165 (2%)
Structural Features:
pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
CD-Length = 1086 residues, 100.0% aligned
Score = 1169 bits (3034), Expect = 0.0
Identities = 531/1166 (45%), Positives = 655/1166 (56%), Gaps = 93/1166 (7%)

COG1330, RecC, Exonuclease V gamma subunit 
[DNA replication, recombination, and repair]
CD-Length = 1078 residues,  99.9% aligned
Score = 1077 bits (2790), Expect = 0.0
Identities = 501/1165 (43%), Positives = 658/1165 (56%), Gaps = 97/1165 (8%)
Genomic Context:
Comment:
ReferenceID:73
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17215
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36648
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:35_cdd.html
URL:
ReferenceID:36796
Author/Investigator(s): Dykstra CC, Prasher D, Kushner SR.
Title: Physical and biochemical analysis of the cloned recB and recC genes of Escherichia coli K-12.
PubMed: 6317651
MedLine:
Source:
J Bacteriol. 1984 Jan;157(1):21-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6317651
ReferenceID:36797
Author/Investigator(s): Finch PW, Wilson RE, Brown K, Hickson ID, Tomkinson AE, Emmerson PT.
Title: Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region.
PubMed: 3520484
MedLine:
Source:
Nucleic Acids Res. 1986 Jun 11;14(11):4437-51.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3520484
Homologs By Global Alignment
Gene ID:35

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
71 PA4285_tr translation of PA4285 1171 99.31 99.40 0 6110.0
11334 gb|AAG07673.1|AE004844_5 (AE004844) exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PAO1] 1171 99.31 99.40 0 6110.0
11335 gb|AAN70247.1|AE016664_3 (AE016791) exodeoxyribonuclease V, gamma subunit [Pseudomonas putida KT2440] 1189 62.91 71.99 47 3733.0
11336 gb|AAO54318.1| (AE016858) exodeoxyribonuclease V, gamma subunit [Pseudomonas syringae pv. tomato str. DC3000] 1184 61.82 72.04 39 3678.0
11337 gb|AAL79571.1| (AY078390) exonuclease V gamma subunit RecC [Pseudomonas syringae] 1175 23.23 28.51 668 1285.0
GC ORFID: 43037How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4285Glimmer Score:
Start: 4235832Stop: 4232317
Length: 3516
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4285 translation of PA4285Homolog Bit Score 2358.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3507 (ORF: BLASTX 1415.0), t_PA4285 (ORF: GLIMMER)
GC ORF Sequence
ATGCCAGAACCCTTGGGAACCACCGCCCTCACGCCCGGATTCATGATCGTCCACGGCAATCGCCTGGACGAC
CTGCGCGACCTCGCCGTTTCCTGGATGCGCCGCTATCCGCTGGCGCCGCTGGAAAGCGAGCGGGTCCTGGTG
CACAGCAACGGCATCGCCCAATGGTTGAAGCTGGCATTGGCCGAAGATCCCCGCGAGGACGGTGGCGGCGGT
GGCGGCATCGCCGCGGCGCTGGAGGTGCAGTTGCCGGCGCAGTTCCTCTGGCAGGCCTATCGCGCGGTGCTG
GGCCGCGAAAGCATTCCCGAGGTTTCCGAACTGGACAAGGCGCCGCTGACCTGGCGCCTGATGCGTCTGCTT
CCCGGATTGCTGGAGCGTCCCGAGTTCCGCACCCTGCAACGTTTCCTCGCCGACGATGCCGACCTGCGCAAG
CGTCATCAACTGGCCGAGCGCCTGGCCGACCTGTTCGACCAGTACCAGGTCTATCGCGGCGACTGGCTCGAC
GACTGGAGCCAGGGCCGCGACCAGTTGCGCACGGCGAACGGGCAGGCGCGCCCGCTCGGTGCCGACGAGCGC
TGGCAGGCCGAATTGTGGCGCGCGCTGCTCGCCGACGTCGGTGCCGATAGCCTGGCCCGCAGCCGCTCCGGC
GTGCACCGGCGCTTCATCGAGGCGCTGCGCTTCGCCAGCGCGGCGCCGCGCGCGTTGCCGCGACGAGTAGTG
GTGTTCGGGATTTCCTCGATGCCGGCGCAGACCCTCGAGGCGCTGGCCGCCCTGGCCAGGTTCAGCCAGGTG
CTGCTCTGCGTGCACAACCCCTGTCGCCACCACTGGGCCGACATCGTCGCCGACAAGGACCTGTTGCGCCAC
GAGTACCGCCGCCAGCAGCGCCGCGCCGGCGTCCCCGCCGACCTCGACGAGGACCGCCAGCACCAGCATGCC
CAGCCGTTGCTGGCGGCCTGGGGCAAGCAGGGCCGCGACTACATCAACCTGCTCGACAGCTACGACGACCCG
GACAGCTATCGGAACCTGTTCGGCGAGGTCAACGGCGGGCGCATCGACCTGTTCAGCGAGGAGGCCCCGCAC
GGGCTGCTCGGCCAGTTGCAGGACGATATCCTCGAACTGCGCCCGTTGGCGGAAACCCGCGAGCACTGGCCG
CCGGTGGCGCCGCGGAGCGACGCCTCGATCCGCTTCCATGTGGCCCACAGCGCGCAGCGCGAAGTGGAGATC
CTCCACGACCAGTTGCTCGCCCGCTTCAACGCCGATCCGAGCCTGAAGCCGCGCGACGTGATCGTCATGGTC
CCCGACATCAACGCCTACGCGCCGCACATCGAGGCGGTGTTCGGCCAGGTGCCGCGCGACGACCAGCGCTTC
ATTCCCTATACCCTGGCCGACCAGGGACAGCGCGGTCGCGAGCCGCTGCTGATCGCCCTGGAGCACCTGCTG
AAACTGCCCGACAGCCGTTTCGCCGTGAGCGAGATCCTCGACCTGCTGGACGTCCCGGCATTGCGCCGGCGT
TTCGGCGTCGACGAGGCCGACCTGGCGACCCTGCACCGCTGGATCGAAGGCGCCGGCGTGCGCTGGGGGCTG
GATGCCGCGCAGCGCGAGCGTCTCGGCCTGCCAGCGGGGCTGGAGGGCAACAGTTGGCGCTTCGGTCTGCGG
CGCATGCTGCTCGGCTACGCGGTCGGCGAAGGTGCGGCCCTGCAAGGCATCCAGCCCTACGATGAGGTCGGT
GGCCTGGACGCCGCCCTCGCAGGCCCGCTGGCTGTGCTGCTGGAGCGCCTCGAGGTGGCCTACGCCGAGCTG
GCCGAACCGGCCACCCCGGCGCAGTGGGGCGAGCGCCTGCAGGCCCTGCTCACGGTGTTCTTCGAGGCCCAC
GACGAGCGCGACGAACTGCTTCTCACCCAGCTTCTGCAATTGCTCGAACGCTGGCAGGAACACTGCGCCTGT
GCGGCCTTCGCCGAGCCGCTGCCGATCAGCGTGATACGCGAGGCCTGGCTCGGCGGCCTGGACCAGGGCGGC
TTGAACCAGCGCTTCCTGGCTGGCGCGGTGAGTTTCTGCACGCTGATGCCGATGCGCGCGATCCCGTTCCGG
CTGGTCTGCCTGCTTGGCATGAACGATGGCGACTACCCCCGCCAGCAGTCGCCGCTGGATTTCGACCTGATG
CGCAACGACTACCGCCCCGGCGACCGCTCGCGGCGCGAGGACGACCGCTACCTGCTGCTCGAGGCGCTGCTC
TCGGCGCGCGAGCAACTCTACGTGAGCTGGGTGGGGCGGAGTATCCGCGACAATGGCGAGCGGCCGCCCTCG
GTGCTGATCGGCCAGTTGCGCGATCACCTGGCGGCCGGCTGGCGCCTGGATCCGGACGGCGACGGCGAGGCG
CTGCTGCGTGCCCTGACCCAGGAGCATCCGCTGCAGCCGTTCAGCCGCCGGTATTTTCACGATGCGCCGGAG
CAGGGCGTCGATGGCCTGTTCACCTACGCCCGCGAGTGGCGCGAGGTCCATCGCGAGGACGAGATCGGCGCT
CCCGACGCCGAAGCGCCCCTGCCGCCGCTGGAACTGGAGGGCGCGCTGGGGCTGCGAGCGCTGGCGGAGTTC
CTCGCCAACCCGGTGAATGCGTTCTTCCAGCAGCGGCTCAAGGTGCGTTTCGACGACGAGCAATTGACCGGC
AACGACGAAGAGCCTTTCGAACTGGACGCGCTGGACAACTGGAAGCTGCAATTCGAGCTGACCGAACGCATG
AAGCGCTGGGTCGAGCGGGACTGGGATGCCGAGGGCCTGCCGGCGCAGTTGCAGGCCCAGGTCGAGCGACTG
CGGCGACAGGGTCGCCTGCCGCTGGCGGCGTTCGGCGAGTTCTCCGCGCGCCATTTGCTGCAACCGCTGCCC
GACCTGCTCTGGCGCTACCGCCAGGAAATCGAGCGCTGGCCGGAGGCGGTCGAGCAGCAGCAGGAGTTGCGC
CATCGCCATTCGTCCGGGCTGGAGCTGGAGGACTGGCTCGGCGGCTTGCGTCGCGACGCTTCCGGGCGCCTG
GCGCGCCTGCAGTTGCTCAGCGGCAAGCTCCATGAAGGGCGCGGCTTCAAGTGGCACAGCCTGGTGCGCCAC
TGGTTGCAGCACCTCGCCCTGCAACGTCTCGGCCAGCCGGTGAGCAGCGTGCTGGTGAGCCAGACCGGCACC
CTGGAGATTCCGCCGCTGCCGAGCGAGCGCGCCGGCGAGTACCTCGACCAGTTGATCGACGCCTGGCGCCAG
GGCATGCGCCAGCCGTTGCCGGTGGCCTGCCGGACCGCTTTCGCCTGGCTCGCCAGTGGTGGCGCCGCAGAG
CCCGAGAAAGCCATGCGCGAGGCGCGCAAGCGCTACGAGGGAGGGTTCGGCATGGGGGGCGAGGTGGACGCC
TCGCCGGCGCTGGCTCGGGTCTATCCGGACTTCGACCGGCTGCTCGCCAGCGGTGAGTTCGCGCACTGGGCC
GAGCAGCTCTACGCGCCGCTGCTGGCTGCCCTGGGGCGTGGCGCGGAGGAGCAGGCATGA