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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07673.1|AE004844_5 (AE004844) exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PAO1]
Identities = 1163/1171 (99%), Positives = 1164/1171 (99%)
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Sequence:
ATGCCAGAACCCTTGGGAACCACCGCCCTCACGCCCGGATTCATGATCGTCCACGGCAATCGCCTGGACGAC
CTGCGCGACCTCGCCGTTTCCTGGATGCGCCGCTATCCGCTGGCGCCGCTGGAAAGCGAGCGGGTCCTGGTG
CACAGCAACGGCATCGCCCAATGGTTGAAGCTGGCATTGGCCGAAGATCCCCGCGAGGACGGTGGCGGCGGT
GGCGGCATCGCCGCGGCGCTGGAGGTGCAGTTGCCGGCGCAGTTCCTCTGGCAGGCCTATCGCGCGGTGCTG
GGCCGCGAAAGCATTCCCGAGGTTTCCGAACTGGACAAGGCGCCGCTGACCTGGCGCCTGATGCGTCTGCTT
CCCGGATTGCTGGAGCGTCCCGAGTTCCGCACCCTGCAACGTTTCCTCGCCGACGATGCCGACCTGCGCAAG
CGTCATCAACTGGCCGAGCGCCTGGCCGACCTGTTCGACCAGTACCAGGTCTATCGCGGCGACTGGCTCGAC
GACTGGAGCCAGGGCCGCGACCAGTTGCGCACGGCGAACGGGCAGGCGCGCCCGCTCGGTGCCGACGAGCGC
TGGCAGGCCGAATTGTGGCGCGCGCTGCTCGCCGACGTCGGTGCCGATAGCCTGGCCCGCAGCCGCTCCGGC
GTGCACCGGCGCTTCATCGAGGCGCTGCGCTTCGCCAGCGCGGCGCCGCGCGCGTTGCCGCGACGAGTAGTG
GTGTTCGGGATTTCCTCGATGCCGGCGCAGACCCTCGAGGCGCTGGCCGCCCTGGCCAGGTTCAGCCAGGTG
CTGCTCTGCGTGCACAACCCCTGTCGCCACCACTGGGCCGACATCGTCGCCGACAAGGACCTGTTGCGCCAC
GAGTACCGCCGCCAGCAGCGCCGCGCCGGCGTCCCCGCCGACCTCGACGAGGACCGCCAGCACCAGCATGCC
CAGCCGTTGCTGGCGGCCTGGGGCAAGCAGGGCCGCGACTACATCAACCTGCTCGACAGCTACGACGACCCG
GACAGCTATCGGAACCTGTTCGGCGAGGTCAACGGCGGGCGCATCGACCTGTTCAGCGAGGAGGCCCCGCAC
GGGCTGCTCGGCCAGTTGCAGGACGATATCCTCGAACTGCGCCCGTTGGCGGAAACCCGCGAGCACTGGCCG
CCGGTGGCGCCGCGGAGCGACGCCTCGATCCGCTTCCATGTGGCCCACAGCGCGCAGCGCGAAGTGGAGATC
CTCCACGACCAGTTGCTCGCCCGCTTCAACGCCGATCCGAGCCTGAAGCCGCGCGACGTGATCGTCATGGTC
CCCGACATCAACGCCTACGCGCCGCACATCGAGGCGGTGTTCGGCCAGGTGCCGCGCGACGACCAGCGCTTC
ATTCCCTATACCCTGGCCGACCAGGGACAGCGCGGTCGCGAGCCGCTGCTGATCGCCCTGGAGCACCTGCTG
AAACTGCCCGACAGCCGTTTCGCCGTGAGCGAGATCCTCGACCTGCTGGACGTCCCGGCATTGCGCCGGCGT
TTCGGCGTCGACGAGGCCGACCTGGCGACCCTGCACCGCTGGATCGAAGGCGCCGGCGTGCGCTGGGGGCTG
GATGCCGCGCAGCGCGAGCGTCTCGGCCTGCCAGCGGGGCTGGAGGGCAACAGTTGGCGCTTCGGTCTGCGG
CGCATGCTGCTCGGCTACGCGGTCGGCGAAGGTGCGGCCCTGCAAGGCATCCAGCCCTACGATGAGGTCGGT
GGCCTGGACGCCGCCCTCGCAGGCCCGCTGGCTGTGCTGCTGGAGCGCCTCGAGGTGGCCTACGCCGAGCTG
GCCGAACCGGCCACCCCGGCGCAGTGGGGCGAGCGCCTGCAGGCCCTGCTCACGGTGTTCTTCGAGGCCCAC
GACGAGCGCGACGAACTGCTTCTCACCCAGCTTCTGCAATTGCTCGAACGCTGGCAGGAACACTGCGCCTGT
GCGGCCTTCGCCGAGCCGCTGCCGATCAGCGTGATACGCGAGGCCTGGCTCGGCGGCCTGGACCAGGGCGGC
TTGAACCAGCGCTTCCTGGCTGGCGCGGTGAGTTTCTGCACGCTGATGCCGATGCGCGCGATCCCGTTCCGG
CTGGTCTGCCTGCTTGGCATGAACGATGGCGACTACCCCCGCCAGCAGTCGCCGCTGGATTTCGACCTGATG
CGCAACGACTACCGCCCCGGCGACCGCTCGCGGCGCGAGGACGACCGCTACCTGCTGCTCGAGGCGCTGCTC
TCGGCGCGCGAGCAACTCTACGTGAGCTGGGTGGGGCGGAGTATCCGCGACAATGGCGAGCGGCCGCCCTCG
GTGCTGATCGGCCAGTTGCGCGATCACCTGGCGGCCGGCTGGCGCCTGGATCCGGACGGCGACGGCGAGGCG
CTGCTGCGTGCCCTGACCCAGGAGCATCCGCTGCAGCCGTTCAGCCGCCGGTATTTTCACGATGCGCCGGAG
CAGGGCGTCGATGGCCTGTTCACCTACGCCCGCGAGTGGCGCGAGGTCCATCGCGAGGACGAGATCGGCGCT
CCCGACGCCGAAGCGCCCCTGCCGCCGCTGGAACTGGAGGGCGCGCTGGGGCTGCGAGCGCTGGCGGAGTTC
CTCGCCAACCCGGTGAATGCGTTCTTCCAGCAGCGGCTCAAGGTGCGTTTCGACGACGAGCAATTGACCGGC
AACGACGAAGAGCCTTTCGAACTGGACGCGCTGGACAACTGGAAGCTGCAATTCGAGCTGACCGAACGCATG
AAGCGCTGGGTCGAGCGGGACTGGGATGCCGAGGGCCTGCCGGCGCAGTTGCAGGCCCAGGTCGAGCGACTG
CGGCGACAGGGTCGCCTGCCGCTGGCGGCGTTCGGCGAGTTCTCCGCGCGCCATTTGCTGCAACCGCTGCCC
GACCTGCTCTGGCGCTACCGCCAGGAAATCGAGCGCTGGCCGGAGGCGGTCGAGCAGCAGCAGGAGTTGCGC
CATCGCCATTCGTCCGGGCTGGAGCTGGAGGACTGGCTCGGCGGCTTGCGTCGCGACGCTTCCGGGCGCCTG
GCGCGCCTGCAGTTGCTCAGCGGCAAGCTCCATGAAGGGCGCGGCTTCAAGTGGCACAGCCTGGTGCGCCAC
TGGTTGCAGCACCTCGCCCTGCAACGTCTCGGCCAGCCGGTGAGCAGCGTGCTGGTGAGCCAGACCGGCACC
CTGGAGATTCCGCCGCTGCCGAGCGAGCGCGCCGGCGAGTACCTCGACCAGTTGATCGACGCCTGGCGCCAG
GGCATGCGCCAGCCGTTGCCGGTGGCCTGCCGGACCGCTTTCGCCTGGCTCGCCAGTGGTGGCGCCGCAGAG
CCCGAGAAAGCCATGCGCGAGGCGCGCAAGCGCTACGAGGGAGGGTTCGGCATGGGGGGCGAGGTGGACGCC
TCGCCGGCGCTGGCTCGGGTCTATCCGGACTTCGACCGGCTGCTCGCCAGCGGTGAGTTCGCGCACTGGGCC
GAGCAGCTCTACGCGCCGCTGCTGGCTGCCCTGGGGCGTGGCGCGGAGGAGCAGGCATGA |
Translation:
MPEPLGTTALTPGFMIVHGNRLDDLRDLAVSWMRRYPLAPLESERVLVHSNGIAQWLKLALAEDPREDGGGG
GGIAAALEVQLPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRFLADDADLRK
RHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRALLADVGADSLARSRSG
VHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARFSQVLLCVHNPCRHHWADIVADKDLLRH
EYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGKQGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPH
GLLGQLQDDILELRPLAETREHWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMV
PDINAYAPHIEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPALRRR
FGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVGEGAALQGIQPYDEVG
GLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFFEAHDERDELLLTQLLQLLERWQEHCAC
AAFAEPLPISVIREAWLGGLDQGGLNQRFLAGAVSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLM
RNDYRPGDRSRREDDRYLLLEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEA
LLRALTQEHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGAPDAEAPLPPLELEGALGLRALAEF
LANPVNAFFQQRLKVRFDDEQLTGNDEEPFELDALDNWKLQFELTERMKRWVERDWDAEGLPAQLQAQVERL
RRQGRLPLAAFGEFSARHLLQPLPDLLWRYRQEIERWPEAVEQQQELRHRHSSGLELEDWLGGLRRDASGRL
ARLQLLSGKLHEGRGFKWHSLVRHWLQHLALQRLGQPVSSVLVSQTGTLEIPPLPSERAGEYLDQLIDAWRQ
GMRQPLPVACRTAFAWLASGGAAEPEKAMREARKRYEGGFGMGGEVDASPALARVYPDFDRLLASGEFAHWA
EQLYAPLLAALGRGAEEQA* |
AnnotationID:45 | GeneID:35 |
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Modification Date/Time: |
2005-04-03 19:07:55 |
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GeneProduct: | exodeoxyribonuclease V gamma chain |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN70247.1|AE016664_3 (AE016791) exodeoxyribonuclease V, gamma subunit [Pseudomonas putida
KT2440]
Length = 1160
Score = 1432 bits (3708), Expect = 0.0
Identities = 743/1166 (63%), Positives = 850/1166 (72%), Gaps = 27/1166 (2%)
>gb|AAO54318.1| (AE016858) exodeoxyribonuclease V, gamma subunit [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 1158
Score = 1413 bits (3658), Expect = 0.0
Identities = 726/1165 (62%), Positives = 846/1165 (72%), Gaps = 31/1165 (2%) |
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Structural Features: | pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
CD-Length = 1086 residues, 100.0% aligned
Score = 1169 bits (3034), Expect = 0.0
Identities = 531/1166 (45%), Positives = 655/1166 (56%), Gaps = 93/1166 (7%)
COG1330, RecC, Exonuclease V gamma subunit
[DNA replication, recombination, and repair]
CD-Length = 1078 residues, 99.9% aligned
Score = 1077 bits (2790), Expect = 0.0
Identities = 501/1165 (43%), Positives = 658/1165 (56%), Gaps = 97/1165 (8%) |
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