ViewGene
Locus Name:
GeneID:
Location:

GeneID:3499
TrivialName: PA14_20740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20740
PAO1 Ortholog Locus:PA3350
Sequence Length:699
Protein Length:232
Start: 1785274
Stop: 1784576
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06738.1|AE004757_7 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 230/232 (99%), Positives = 231/232 (99%)
Sequence:
TTGCTCGGGCTCGGCTACCTGTGCGCGGCTAACAACAGCCAGGCCCAGGGTTTTACCGCTCCCGAGGTACTT
ATCGGCTCCACCCAGGGGTTTCTTGAATTCAAGGTAGAAGAATATCTGCAGAATAGCGGACTCGACGGGCGC
TACCAGATTCAGGTCAATCGCGTCGACCCGCGCTTGCGCCTGGCCGAATGCGACAGGGACTTGACGCTCAGC
CAGGAAAGTCCGGCACAACCGATCGGCAGGGTCACCGTACGCATCGGTTGCGAAGGCAGTGCGCCCTGGACC
ATCTTCATGCCGGCGCAGGTGAAGCTGTTCCGCCAGGTGGTGGTCGCAGTGCAGCCTCTCAAGCGCGCGCAC
GTGCTGGAGGATGCCGACATCGCCCTGGTCGAGCGCGACGTCGGCCTGCTGACCCAGGGCTACCTGACCGAT
CCGGCCCGCGTCGTCGGGCAGAAGCTGCGCCGACCGGTGGTCAACGACCAGGTGCTGGCGCCGGTCTTCCTC
GAGCAGGCCGAAGCCGTGCGCAAGGGCGATCAGGTGGTGATTCTCGCGCGCACCGCCACCATCAACGTCAAG
ATGCCCGGCGAGGCGCTGTCCGATGGCGCCCCGGGCCAGCAGATCCGCGTGCGCAACCTGCGCTCGCAGCGG
GTGATCAAGGCCCGCGTGATAGAGCCCGGCACGGTCGAGGTGAATATGTAG
Translation:
MLGLGYLCAANNSQAQGFTAPEVLIGSTQGFLEFKVEEYLQNSGLDGRYQIQVNRVDPRLRLAECDRDLTLS
QESPAQPIGRVTVRIGCEGSAPWTIFMPAQVKLFRQVVVAVQPLKRAHVLEDADIALVERDVGLLTQGYLTD
PARVVGQKLRRPVVNDQVLAPVFLEQAEAVRKGDQVVILARTATINVKMPGEALSDGAPGQQIRVRNLRSQR
VIKARVIEPGTVEVNM*
AnnotationID:3507GeneID:3499
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 13:01:33
Gene Name:flgA
Confidence Code:3
GeneProduct:putative flagella basal body P-ring formation protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03240,COG1261
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69972.1|AE016635_8 (AE016790) flagella basal body P-ring formation protein FlgA
           [Pseudomonas putida KT2440]
          Length = 225

 Score =  268 bits (686), Expect = 1e-71
 Identities = 136/218 (62%), Positives = 166/218 (76%)

>gb|AAO55444.1| (AE016862) flagellar protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 248

 Score =  259 bits (661), Expect = 1e-68
 Identities = 131/235 (55%), Positives = 174/235 (74%), Gaps = 4/235 (1%)






 
Structural Features:
pfam03240, FlgA, FlgA family. This protein is involved 
in the assembly of the flageller P-ring.
CD-Length = 168 residues,  79.8% aligned
Score = 83.4 bits (206), Expect = 2e-17
Identities = 39/134 (29%), Positives = 66/134 (49%)

COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein 
[Cell motility and secretion / 
Posttranslational modification, protein turnover, chaperones]
CD-Length = 220 residues, 100.0% aligned
Score =  169 bits (429), Expect = 3e-43
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 12/232 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24143




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32204




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3499_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3499
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5579
                           PA3350_tr
                           translation of PA3350
                           232
                           99.13
                           99.56
                           0
                           1157.0
     

     
     
155743
                           gb|AAG06738.1|AE004757_7
                           (AE004757) hypothetical protein PA3350 [Pseudomonas aeruginosa PAO1]
                           232
                           98.70
                           99.56
                           0
                           1155.0
     

     
     
155744
                           gb|AAK31635.1|
                           (AY029221) FlgA [Pseudomonas aeruginosa]
                           232
                           80.17
                           80.60
                           44
                           932.0
     

     
     
155745
                           gb|AAN69972.1|AE016635_8
                           (AE016790) flagella basal body P-ring formation protein FlgA [Pseudomonas putida KT2440]
                           232
                           58.62
                           71.98
                           7
                           680.0
     

     
     
155746
                           gb|AAO55444.1|
                           (AE016862) flagellar protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           249
                           53.01
                           69.87
                           18
                           668.0
     

     






      

          
GC ORFID: 46501How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3350Glimmer Score: 

          
Start: 3168658Stop: 3169356

          
Length: 699


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3350 translation of PA3350Homolog Bit Score 450.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7559 (ORF: BLASTX 261.0), t_PA3350 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCTCGGGCTCGGCTACCTGTGCGCGGCTAACAACAGCCAGGCCCAGGGTTTTACCGCTCCCGAGGTACTT 
ATCGGCTCCACCCAGGGGTTTCTTGAATTCAAGGTAGAAGAATATCTGCAGAATAGCGGACTCGACGGGCGC 
TACCAGATTCAGGTCAATCGCGTCGACCCGCGCTTGCGCCTGGCCGAATGCGACAGGGACTTGACGCTCAGC 
CAGGAAAGTCCGGCACAACCGATCGGCAGGGTCACCGTACGCATCGGTTGCGAAGGCAGTGCGCCCTGGACC 
ATCTTCATGCCGGCGCAGGTGAAGCTGTTCCGCCAGGTGGTGGTCGCAGTGCAGCCTCTCAAGCGCGCGCAC 
GTGCTGGAGGATGCCGACATCGCCCTGGTCGAGCGCGACGTCGGCCTGCTGACCCAGGGCTACCTGACCGAT 
CCGGCCCGCGTCGTCGGGCAGAAGCTGCGCCGACCGGTGGTCAACGACCAGGTGCTGGCGCCGGTCTTCCTC 
GAGCAGGCCGAAGCCGTGCGCAAGGGCGATCAGGTGGTGATTCTCGCGCGCACCGCCACCATCAACGTCAAG 
ATGCCCGGCGAGGCGCTGTCCGATGGCGCCCCGGGCCAGCAGATCCGCGTGCGCAACCTGCGCTCGCAGCGG 
GTGATCAAGGCCCGCGTGATAGAGCCCGGCACGGTCGAGGTGAATATGTAG