ViewGene
Locus Name:
GeneID:
Location:

GeneID:3497
TrivialName: PA14_51750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51750
PAO1 Ortholog Locus:PA0969
Sequence Length:696
Protein Length:231
Start: 4597687
Stop: 4596992
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04358.1|AE004530_11 (AE004530) TolQ protein [Pseudomonas aeruginosa PAO1]
Identities = 231/231 (100%), Positives = 231/231 (100%)
Sequence:
GTGGAACCGAACGTCGTCGACCATACCTCCATGTGGAGCCTGATCAGCAACGCCAGTATCGTGGTGCAGCTG
GTCATGCTGACCCTCGTGGCCGCCTCGGTCACATCCTGGATCATGATTTTCCAGCGCGGCAACGCCATGCGC
GCTGCCAAGAAGGCACTGGATGCCTTCGAAGAACGCTTCTGGTCGGGCATCGACCTGTCCAAGCTGTATCGC
CAGGCCGGTAGCAATCCGGACCCGGACTCCGGCGTCGAGCAGATCTTCCGTGCCGGCTTCAAGGAGTTTTCC
CGTCTGCGCCAGCAGCCCGGCGTCGATCCCGATGCAGTGATGGAGGGCGTGGCGCGCGCCATGCGTGTGGCC
ATCTCCCGTGAGGAGGAGAAACTCGAGGCCAGCCTGCCGTTCCTGGCAACCGTCGGCTCCACCAGCCCGTAC
GTCGGCCTGTTCGGTACCGTCTGGGGTATCATGAATTCCTTCCGTGGCCTGGCCACCGTGCAGCAGGCTACC
CTGGCCACCGTCGCCCCGGGTATCGCCGAAGCGCTGATCGCCACCGCCATCGGCCTGTTCGCCGCGATCCCC
GCGGTCATCGCCTACAACCGCTTCTCCGCACGTTCTGAGATGCTGATCGGTCGTTACTACACCTTCGCCGAC
GAGTTCCAGGCCATCCTGCACCGCAAGGTGCACACCAGCGACGACTAA
Translation:
MEPNVVDHTSMWSLISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWSGIDLSKLYR
QAGSNPDPDSGVEQIFRAGFKEFSRLRQQPGVDPDAVMEGVARAMRVAISREEEKLEASLPFLATVGSTSPY
VGLFGTVWGIMNSFRGLATVQQATLATVAPGIAEALIATAIGLFAAIPAVIAYNRFSARSEMLIGRYYTFAD
EFQAILHRKVHTSDD*
AnnotationID:3505GeneID:3497
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:39
Gene Name:tolQ
Confidence Code:1
GeneProduct:TolQ protein
Cell Localization:(4) Inner membrane protein
Synonyms:PA0969
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0811
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]
      CD-Length = 216 residues, 100.0% aligned
      Score =  206 bits (526), Expect = 1e-54






   
Genomic Context:
tolQRAB (Pseudomonas aeruginosa)






   
Comment:


















    ReferenceID:14863




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32063




  
Author/Investigator(s):
        Dennis JJ, Lafontaine ER, Sokol PA.





  
Title:
        Identification and characterization of the tolQRA genes of Pseudomonas aeruginosa.




  
PubMed:
        97113525


MedLine:
        




    
Source:
J Bacteriol. 1996 Dec;178(24):7059-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32064




  
Author/Investigator(s):
        Lafontaine ER, Sokol PA.





  
Title:
        Effects of iron and temperature on expression of the Pseudomonas aeruginosa tolQRA genes: role of the ferric uptake regulator.




  
PubMed:
        98268995


MedLine:
        




    
Source:
J Bacteriol. 1998 Jun;180(11):2836-41.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3497
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5575
                           PA0969_tr
                           translation of PA0969
                           231
                           99.99
                           99.99
                           0
                           1157.0
     

     
     
155478
                           gb|AAG04358.1|AE004530_11
                           (AE004530) TolQ protein [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.99
                           0
                           1154.0
     

     
     
155479
                           gb|AAC44658.1|
                           (U39558) TolQ [Pseudomonas aeruginosa]
                           231
                           99.56
                           99.99
                           0
                           1154.0
     

     
     
155480
                           gb|AAN66843.1|AE016313_2
                           (AE016778) biopolymer transport protein TolQ [Pseudomonas putida KT2440]
                           231
                           90.90
                           96.53
                           0
                           1080.0
     

     
     
155481
                           emb|CAB50778.1|
                           (X74218) TolQ protein [Pseudomonas putida]
                           231
                           90.90
                           96.53
                           0
                           1080.0
     

     






      

          
GC ORFID: 46499How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0969Glimmer Score: 

          
Start: 356220Stop: 356915

          
Length: 696


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0969 translation of PA0969Homolog Bit Score 450.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4690 (ORF: BLASTX 414.0), t_PA0969 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACCGAACGTCGTCGACCATACCTCCATGTGGAGCCTGATCAGCAACGCCAGTATCGTGGTGCAGCTG 
GTCATGCTGACCCTCGTGGCCGCCTCGGTCACATCCTGGATCATGATTTTCCAGCGCGGCAACGCCATGCGC 
GCTGCCAAGAAGGCACTGGATGCCTTCGAAGAACGCTTCTGGTCGGGCATCGACCTGTCCAAGCTGTATCGC 
CAGGCCGGTAGCAATCCGGACCCGGACTCCGGCGTCGAGCAGATCTTCCGTGCCGGCTTCAAGGAGTTTTCC 
CGTCTGCGCCAGCAGCCCGGCGTCGATCCCGATGCAGTGATGGAGGGCGTGGCGCGCGCCATGCGTGTGGCC 
ATCTCCCGTGAGGAGGAGAAACTCGAGGCCAGCCTGCCGTTCCTGGCAACCGTCGGCTCCACCAGCCCGTAC 
GTCGGCCTGTTCGGTACCGTCTGGGGTATCATGAATTCCTTCCGTGGCCTGGCCACCGTGCAGCAGGCTACC 
CTGGCCACCGTCGCCCCGGGTATCGCCGAAGCGCTGATCGCCACCGCCATCGGCCTGTTCGCCGCGATCCCC 
GCGGTCATCGCCTACAACCGCTTCTCCGCACGTTCTGAGATGCTGATCGGTCGTTACTACACCTTCGCCGAC 
GAGTTCCAGGCCATCCTGCACCGCAAGGTGCACACCAGCGACGACTAA