ViewGene
Locus Name:
GeneID:
Location:

GeneID:3496
TrivialName: PA14_58330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58330
PAO1 Ortholog Locus:PA4495
Sequence Length:711
Protein Length:236
Start: 5194106
Stop: 5194816
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07883.1|AE004863_3 (AE004863) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 236/236 (100%), Positives = 236/236 (100%)
Sequence:
ATGTCTGCGATTTCCCGCCTGGCCGCCGCCGTCACCCTCTGCGCCGCCAGCCTCTCGGCCGTCGCCGAGGAA
GCGCCGCGCTACAACCAGGTCTCGCTGCACGCCGAAGTCAGCCAGCAGGTGGCCCACGACCTGATGCAGGTC
ACCCTCTACAGCGAAAACCAGGGCAGCGATCCGGCCAAGCTCGCCGCCGAAACCACCAGCGTCCTCAACGCC
GCCGTCGCCGACGCGCGCAAGGTCAAGGGCGTGACCATCAGCCTGGGCAGTCGCAACAGCTATCCGGTCTAC
GACGACAAGGGCCAGAAGATCACTGGCTGGCGCGAGCGCGCCGAGCTGCGCCTGGAAAGCTCCGACTTCGCC
GCCCTCGGCCAGCTTTCCGCCGACCTGCTGGGCAAGCTGAAGATGGGCGGCATGGACTTCAGCATCGCCGAT
GCGACCCGCAAGAAGAACGAGGACCAATTGATGAAAGGCGCCGTGGACGCGTTCAAGGAGCGCGCCCAGTTG
CTCACCGAGGCGCTCGGCGGCAAGGGCTACAAGCTGGTCAGCCTGAGCGTGAACAGCGCCGGCGCACCGCGC
CCGTACCCGGTGATGCGGATGGCGGCGATGAAGGCCGACGCCAGCTTCGGTGGCGCCCAGGCGCCGGAGATC
GAGGCCGGGACCAGCCAGGTCACGGTCAACGCCGACGGTGTGATCGAGGTGCAGATGCCCTGA
Translation:
MSAISRLAAAVTLCAASLSAVAEEAPRYNQVSLHAEVSQQVAHDLMQVTLYSENQGSDPAKLAAETTSVLNA
AVADARKVKGVTISLGSRNSYPVYDDKGQKITGWRERAELRLESSDFAALGQLSADLLGKLKMGGMDFSIAD
ATRKKNEDQLMKGAVDAFKERAQLLTEALGGKGYKLVSLSVNSAGAPRPYPVMRMAAMKADASFGGAQAPEI
EAGTSQVTVNADGVIEVQMP*
AnnotationID:3504GeneID:3496
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4495
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3471
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3471, Predicted periplasmic/secreted protein 
CD-Length = 235 residues, 100.0% aligned
Score =  272 bits (696), Expect = 6e-74
Identities = 120/235 (51%), Positives = 142/235 (60%), Gaps = 2/235 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6995




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24137




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31538




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3496_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3496
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5574
                           PA4495_tr
                           translation of PA4495
                           236
                           99.99
                           99.99
                           0
                           1160.0
     

     
     
155475
                           gb|AAG07883.1|AE004863_3
                           (AE004863) hypothetical protein PA4495 [Pseudomonas aeruginosa PAO1]
                           236
                           99.99
                           99.99
                           0
                           1160.0
     

     
     
155476
                           gb|AAN66511.1|AE016280_3
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           238
                           66.38
                           77.31
                           2
                           747.0
     

     
     
155477
                           gb|AAO58003.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           241
                           64.31
                           76.34
                           9
                           720.0
     

     






      

          
GC ORFID: 46498How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4495Glimmer Score: 

          
Start: 4457785Stop: 4458495

          
Length: 711


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4495 translation of PA4495Homolog Bit Score 451.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5608 (ORF: BLASTX 276.0), t_PA4495 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGCGATTTCCCGCCTGGCCGCCGCCGTCACCCTCTGCGCCGCCAGCCTCTCGGCCGTCGCCGAGGAA 
GCGCCGCGCTACAACCAGGTCTCGCTGCACGCCGAAGTCAGCCAGCAGGTGGCCCACGACCTGATGCAGGTC 
ACCCTCTACAGCGAAAACCAGGGCAGCGATCCGGCCAAGCTCGCCGCCGAAACCACCAGCGTCCTCAACGCC 
GCCGTCGCCGACGCGCGCAAGGTCAAGGGCGTGACCATCAGCCTGGGCAGTCGCAACAGCTATCCGGTCTAC 
GACGACAAGGGCCAGAAGATCACTGGCTGGCGCGAGCGCGCCGAGCTGCGCCTGGAAAGCTCCGACTTCGCC 
GCCCTCGGCCAGCTTTCCGCCGACCTGCTGGGCAAGCTGAAGATGGGCGGCATGGACTTCAGCATCGCCGAT 
GCGACCCGCAAGAAGAACGAGGACCAATTGATGAAAGGCGCCGTGGACGCGTTCAAGGAGCGCGCCCAGTTG 
CTCACCGAGGCGCTCGGCGGCAAGGGCTACAAGCTGGTCAGCCTGAGCGTGAACAGCGCCGGCGCACCGCGC 
CCGTACCCGGTGATGCGGATGGCGGCGATGAAGGCCGACGCCAGCTTCGGTGGCGCCCAGGCGCCGGAGATC 
GAGGCCGGGACCAGCCAGGTCACGGTCAACGCCGACGGTGTGATCGAGGTGCAGATGCCCTGA