ViewGene
Locus Name:
GeneID:
Location:

GeneID:3494
TrivialName: PA14_25590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25590
PAO1 Ortholog Locus:PA2974
Sequence Length:693
Protein Length:230
Start: 2237973
Stop: 2238665
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06362.1|AE004723_6 (AE004723) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 227/230 (98%), Positives = 227/230 (98%)
Sequence:
ATGACTGATTACGCGTTGCTGGTATTCGATTGGGACGGCACCCTGGTCGACTCGATCGCGCGCATCGTCGAT
TCGATGAAGGCAGCGGCGCGGGAAACCGCTCTGCCGGAGCGGGACGATACCCGGATCAAGGGCATCATCGGC
CTCGGCTTGCCCGAGGCGATCGCTTCGCTCTATCCGGAGGTTGGCGATCCTGCTCTGGTCGAGCGTTTCCGG
CGTGCCTACAGCGAGCATTACCTGGCGCAGGAGGCGCAGTCGTCGCGGTTGTTTCCCGGCGTGGCCGAAGCC
ATGGTGCATTTTCGCGAGGCCGGGTTCCGCCTGGCGGTCGCCACCGGCAAGAGTCGGCGCGGCCTGGACCGG
GTGCTGGCAGGGCATGGCTGGAGCGATTTCTTCGATATCACCCGCTGCGCCGACGAAACGGCCAGCAAGCCG
GACCCGTTGATGCTCCACGAGATCCTGGCGCACTGCCGGGTCGAGCCGGGGCGGGCGCTGATGATCGGTGAT
TCGCCGTTCGACCTGGAAATGGCGCGACGGGCGGGGATGGATTCGGTTGCGGTGGCCTATGGCGCCCAATCG
CTGGAGCAGTTGCGGCCTTATGCGCCGCGGCTGGAAGTTGAGCATTTCACCGAGTTGCGCGCCTGGTTGGGC
GGTGCTCGACGTGAGGCGGTTTCAGGAGTGGTTGAGCATGTCTGA
Translation:
MTDYALLVFDWDGTLVDSIARIVDSMKAAARETALPERDDTRIKGIIGLGLPEAIASLYPEVGDPALVERFR
RAYSEHYLAQEAQSSRLFPGVAEAMVHFREAGFRLAVATGKSRRGLDRVLAGHGWSDFFDITRCADETASKP
DPLMLHEILAHCRVEPGRALMIGDSPFDLEMARRAGMDSVAVAYGAQSLEQLRPYAPRLEVEHFTELRAWLG
GARREAVSGVVEHV*
AnnotationID:3502GeneID:3494
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 05:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2974
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative HAD-superfamily hydrolase
Functional Category Confidence Code:5
COGs:COG0546
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57307.1| (AE016869) HAD-superfamily hydrolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 220

 Score =  284 bits (726), Expect = 3e-76
 Identities = 142/213 (66%), Positives = 169/213 (79%), Gaps = 1/213 (0%)

>gb|AAN67525.1|AE016381_2 (AE016781) hydrolase, haloacid dehalogenase-like family
           [Pseudomonas putida KT2440]
          Length = 224

 Score =  254 bits (648), Expect = 4e-67
 Identities = 127/215 (59%), Positives = 155/215 (72%), Gaps = 1/215 (0%)








 
Structural Features:
COG0546, Gph, Predicted phosphatases
CD-Length = 220 residues, 100.0% aligned
Score =  171 bits (435), Expect = 6e-44
Identities = 83/222 (37%), Positives = 116/222 (52%), Gaps = 6/222 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6991




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24133




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36078




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3494_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3494
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5572
                           PA2974_tr
                           translation of PA2974
                           230
                           98.69
                           98.69
                           0
                           1161.0
     

     
     
155440
                           gb|AAG06362.1|AE004723_6
                           (AE004723) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           230
                           98.69
                           98.69
                           0
                           1161.0
     

     
     
155441
                           gb|AAO57307.1|
                           (AE016869) HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           231
                           62.33
                           74.02
                           12
                           726.0
     

     
     
155442
                           gb|AAN67525.1|AE016381_2
                           (AE016781) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           236
                           54.23
                           66.10
                           18
                           640.0
     

     
     
155443
                           emb|CAE44807.1|
                           (BX640412) probable hydrolase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           233
                           41.63
                           54.93
                           13
                           421.0
     

     






      

          
GC ORFID: 46496How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2974Glimmer Score: 

          
Start: 2715952Stop: 2715260

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2974 translation of PA2974Homolog Bit Score 451.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2156 (ORF: BLASTX 285.0), t_PA2974 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGATTACGCGTTGCTGGTATTCGATTGGGACGGCACCCTGGTCGACTCGATCGCGCGCATCGTCGAT 
TCGATGAAGGCAGCGGCGCGGGAAACCGCTCTGCCGGAGCGGGACGATACCCGGATCAAGGGCATCATCGGC 
CTCGGCTTGCCCGAGGCGATCGCTTCGCTCTATCCGGAGGTTGGCGATCCTGCTCTGGTCGAGCGTTTCCGG 
CGTGCCTACAGCGAGCATTACCTGGCGCAGGAGGCGCAGTCGTCGCGGTTGTTTCCCGGCGTGGCCGAAGCC 
ATGGTGCATTTTCGCGAGGCCGGGTTCCGCCTGGCGGTCGCCACCGGCAAGAGTCGGCGCGGCCTGGACCGG 
GTGCTGGCAGGGCATGGCTGGAGCGATTTCTTCGATATCACCCGCTGCGCCGACGAAACGGCCAGCAAGCCG 
GACCCGTTGATGCTCCACGAGATCCTGGCGCACTGCCGGGTCGAGCCGGGGCGGGCGCTGATGATCGGTGAT 
TCGCCGTTCGACCTGGAAATGGCGCGACGGGCGGGGATGGATTCGGTTGCGGTGGCCTATGGCGCCCAATCG 
CTGGAGCAGTTGCGGCCTTATGCGCCGCGGCTGGAAGTTGAGCATTTCACCGAGTTGCGCGCCTGGTTGGGC 
GGTGCTCGACGTGAGGCGGTTTCAGGAGTGGTTGAGCATGTCTGA