ViewGene
Locus Name:
GeneID:
Location:

GeneID:3493
TrivialName: PA14_40410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40410
PAO1 Ortholog Locus:PA1862
Sequence Length:687
Protein Length:228
Start: 3610769
Stop: 3611455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05251.1|AE004612_5 (AE004612) molybdenum transport protein ModB [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGGCGTTGCCACTCGACAGTACGGACCTGGCGGCCATCTGGCTGACCATCGAGCTGGCTTCGCTCACCACC
CTCCTCCTGCTGCTGATCGGCACGCCCATCGCCTGGTGGCTGGCGCGCACCCGCTCCTGGCTGAAGGGGCCG
ATCGGCGCGGTGGTGGCCCTGCCGCTGGTGCTGCCGCCGACGGTGATCGGCTTCTACCTGCTGGTCAGCATG
GGTCCCAACGGTTTCATCGGCCAGCTCACCCAGAGCCTCGGTCTCGGCACCCTGCCCTTCACCTTCGCCGGC
CTGGTGGTCGGCTCGGTGTTCTACTCGCTGCCCTTCGTCGTGCAACCGTTGCAGAACGCCTTCGAGGCGATC
GGCGAAAAACCGCTGGAGGCTGCCGCGACCCTGCGCGCGAGCCCCGTCGACCGTTTCTTCAGCGTGGTCCTG
CCGCTGGCCCGGCCGGGTTTCGTCACCGCCGCGATCCTCGGCTTCGCCCATACCGTCGGAGAGTTCGGCGTG
GTGCTGATGATCGGCGGCAACATCCCGGAGAAAACCCGCGTGGTCTCGGTGCAGATATTCGATCACGTCGAA
GCCATGGAATACGCCCAGGCCCACTGGCTGGCCGGCGGCATGGTGGCGTTCTCCTTCGTCGTCCTCCTCGCC
CTCTATTCGGGCCGGCGCCGCCGGCCGGGCTGGGCCTGA
Translation:
MALPLDSTDLAAIWLTIELASLTTLLLLLIGTPIAWWLARTRSWLKGPIGAVVALPLVLPPTVIGFYLLVSM
GPNGFIGQLTQSLGLGTLPFTFAGLVVGSVFYSLPFVVQPLQNAFEAIGEKPLEAAATLRASPVDRFFSVVL
PLARPGFVTAAILGFAHTVGEFGVVLMIGGNIPEKTRVVSVQIFDHVEAMEYAQAHWLAGGMVAFSFVVLLA
LYSGRRRRPGWA*
AnnotationID:3501GeneID:3493
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 06:06:49
Gene Name:modB
Confidence Code:2
GeneProduct:molybdenum transport protein ModB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:molybdenum transport system permease protein
Functional Category Confidence Code:5
COGs:COG4149
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31323.1| (BX640439) molybdenum transport system permease protein [Bordetella
           bronchiseptica]
          Length = 226

 Score =  385 bits (990), Expect = e-107
 Identities = 192/221 (86%), Positives = 205/221 (92%)

>gb|AAN69423.1|AE016578_9 (AE016788) molybdate ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 226

 Score =  375 bits (963), Expect = e-103
 Identities = 177/226 (78%), Positives = 209/226 (92%)

>gb|AAO56466.1| (AE016866) molybdate ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 226

 Score =  369 bits (946), Expect = e-101
 Identities = 179/225 (79%), Positives = 201/225 (89%)






 
Structural Features:
COG4149, ModC, ABC-type molybdate transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 225 residues,  99.6% aligned
Score =  234 bits (599), Expect = 6e-63
Identities = 99/224 (44%), Positives = 135/224 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6989




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37083




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3493_cdd.html


    		




 
URL:

















    ReferenceID:37781




  
Author/Investigator(s):
        Maupin-Furlow JA, Rosentel JK, Lee JH, Deppenmeier U, Gunsalus RP, Shanmugam KT.





  
Title:
        Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli.




  
PubMed:
        7665460


MedLine:
        




    
Source:
J Bacteriol. 1995 Sep;177(17):4851-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7665460









           
Homologs By Global Alignment 

           

       



     
Gene ID:3493
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5571
                           PA1862_tr
                           translation of PA1862
                           228
                           99.99
                           99.99
                           0
                           1160.0
     

     
     
155417
                           gb|AAG05251.1|AE004612_5
                           (AE004612) molybdenum transport protein ModB [Pseudomonas aeruginosa PAO1]
                           228
                           99.99
                           99.99
                           0
                           1160.0
     

     
     
155418
                           emb|CAE31323.1|
                           (BX640439) molybdenum transport system permease protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           229
                           84.71
                           90.39
                           4
                           985.0
     

     
     
155419
                           emb|CAE43362.1|
                           (BX640420) molybdenum transport system permease protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           229
                           84.71
                           90.39
                           4
                           985.0
     

     
     
155420
                           emb|CAE40147.1|
                           (BX640425) molybdenum transport system permease protein [Bordetella parapertussis]
                           229
                           84.27
                           89.95
                           4
                           978.0
     

     






      

          
GC ORFID: 46495How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1862Glimmer Score: 

          
Start: 1343141Stop: 1342455

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1862 translation of PA1862Homolog Bit Score 451.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7034 (ORF: BLASTX 372.0), t_PA1862 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGTTGCCACTCGACAGTACGGACCTGGCGGCCATCTGGCTGACCATCGAGCTGGCTTCGCTCACCACC 
CTCCTCCTGCTGCTGATCGGCACGCCCATCGCCTGGTGGCTGGCGCGCACCCGCTCCTGGCTGAAGGGGCCG 
ATCGGCGCGGTGGTGGCCCTGCCGCTGGTGCTGCCGCCGACGGTGATCGGCTTCTACCTGCTGGTCAGCATG 
GGTCCCAACGGTTTCATCGGCCAGCTCACCCAGAGCCTCGGTCTCGGCACCCTGCCCTTCACCTTCGCCGGC 
CTGGTGGTCGGCTCGGTGTTCTACTCGCTGCCCTTCGTCGTGCAACCGTTGCAGAACGCCTTCGAGGCGATC 
GGCGAAAAACCGCTGGAGGCTGCCGCGACCCTGCGCGCGAGCCCCGTCGACCGTTTCTTCAGCGTGGTCCTG 
CCGCTGGCCCGGCCGGGTTTCGTCACCGCCGCGATCCTCGGCTTCGCCCATACCGTCGGAGAGTTCGGCGTG 
GTGCTGATGATCGGCGGCAACATCCCGGAGAAAACCCGCGTGGTCTCGGTGCAGATATTCGATCACGTCGAA 
GCCATGGAATACGCCCAGGCCCACTGGCTGGCCGGCGGCATGGTGGCGTTCTCCTTCGTCGTCCTCCTCGCC 
CTCTATTCGGGCCGGCGCCGCCGGCCGGGCTGGGCCTGA