ViewGene
Locus Name:
GeneID:
Location:

GeneID:3492
TrivialName: PA14_50630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50630
PAO1 Ortholog Locus:PA1064
Sequence Length:666
Protein Length:221
Start: 4498513
Stop: 4499178
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04453.1|AE004538_5 (AE004538) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGCGCCCTGCCCGTCTGCTGGTCTACAGCCTGCTCCCCTTGTTCGCCGCCTGCCAGGTGTGGAAGCCCGAA
TCGCCGAGCACCAGTGTAGACACCCGCTTCCAGGGCGAACTGGTGAAGATCAACGGCGCGCTGCAATTCCGC
CCCTGTACCGAGAAGCGCCTGTTCAGCATCGAGGACGTGGCCAATACCGGCCTGCGCCGCGAAGCCGATAGC
CTGTTCGACGACGGCGCCCAGGGCCTGTTCGTCGACCTGCGCGGCACCATGGGACCGGCCAAGGTCCGCGGT
ACCGACGGCAAGCTGGAGGTCAGCCGACTGTACCGCGTGCAGAACGAGGGCCCCGGCTGCGACGACCCGAAC
TTCAAGCTGCTGACCTTCGCCGCCAATGGCAACGAACCCTTCTGGAGCGCCAGGGTGAACAACCAGGGCCTG
CGCCTGGACCGCCCCGAACACGAGACCCTGGCCTTGCCTTACGTCGCCGAGGAACTGCCGAACGGCAGCACC
AGCTATTCCAGCGAGGCGAACGGCAAGAAGGTCGAACTGTGGATCGCCCCGTCGTCCTGCACCGACAGCATG
AGCGGTGCCTTCAGCAGCTACTCCGCCGAACTGCGCATCGATGGCGAGACGCTGCGCGGCTGCGCCTATCCG
GGCGCACTGGGCAAGTGA
Translation:
MRPARLLVYSLLPLFAACQVWKPESPSTSVDTRFQGELVKINGALQFRPCTEKRLFSIEDVANTGLRREADS
LFDDGAQGLFVDLRGTMGPAKVRGTDGKLEVSRLYRVQNEGPGCDDPNFKLLTFAANGNEPFWSARVNNQGL
RLDRPEHETLALPYVAEELPNGSTSYSSEANGKKVELWIAPSSCTDSMSGAFSSYSAELRIDGETLRGCAYP
GALGK*
AnnotationID:3500GeneID:3492
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1064
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3650
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3650, Predicted membrane protein [Function unknown]
       CD-Length = 149 residues,  96.6% aligned
       Score =  190 bits (483), Expect = 1e-49






   
Genomic Context:






   
Comment:


















    ReferenceID:6987




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3492
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5570
                           PA1064_tr
                           translation of PA1064
                           221
                           99.99
                           99.99
                           0
                           1159.0
     

     
     
155414
                           gb|AAG04453.1|AE004538_5
                           (AE004538) hypothetical protein PA1064 [Pseudomonas aeruginosa PAO1]
                           221
                           99.99
                           99.99
                           0
                           1159.0
     

     
     
155415
                           gb|AAO57569.1|
                           (AE016870) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           229
                           44.54
                           63.75
                           11
                           508.0
     

     
     
155416
                           gb|AAN66760.1|AE016304_5
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           248
                           41.53
                           54.83
                           29
                           498.0
     

     






      

          
GC ORFID: 46494How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1064Glimmer Score: 

          
Start: 455395Stop: 454730

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1064 translation of PA1064Homolog Bit Score 451.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6078 (ORF: BLASTX 200.0), t_PA1064 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCCTGCCCGTCTGCTGGTCTACAGCCTGCTCCCCTTGTTCGCCGCCTGCCAGGTGTGGAAGCCCGAA 
TCGCCGAGCACCAGTGTAGACACCCGCTTCCAGGGCGAACTGGTGAAGATCAACGGCGCGCTGCAATTCCGC 
CCCTGTACCGAGAAGCGCCTGTTCAGCATCGAGGACGTGGCCAATACCGGCCTGCGCCGCGAAGCCGATAGC 
CTGTTCGACGACGGCGCCCAGGGCCTGTTCGTCGACCTGCGCGGCACCATGGGACCGGCCAAGGTCCGCGGT 
ACCGACGGCAAGCTGGAGGTCAGCCGACTGTACCGCGTGCAGAACGAGGGCCCCGGCTGCGACGACCCGAAC 
TTCAAGCTGCTGACCTTCGCCGCCAATGGCAACGAACCCTTCTGGAGCGCCAGGGTGAACAACCAGGGCCTG 
CGCCTGGACCGCCCCGAACACGAGACCCTGGCCTTGCCTTACGTCGCCGAGGAACTGCCGAACGGCAGCACC 
AGCTATTCCAGCGAGGCGAACGGCAAGAAGGTCGAACTGTGGATCGCCCCGTCGTCCTGCACCGACAGCATG 
AGCGGTGCCTTCAGCAGCTACTCCGCCGAACTGCGCATCGATGGCGAGACGCTGCGCGGCTGCGCCTATCCG 
GGCGCACTGGGCAAGTGA