ViewGene
Locus Name:
GeneID:
Location:

GeneID:3491
TrivialName: PA14_00770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00770
PAO1 Ortholog Locus:PA0065
Sequence Length:666
Protein Length:221
Start: 75741
Stop: 75076
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03455.1|AE004446_3 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/221 (99%), Positives = 220/221 (99%)
Sequence:
ATGCGTGACGCCACGCTGCGCTACCCGAACATCCTCTTCGATCTCGACGGCACCCTCACCGACCCGCGCGAG
GGCATCACCCGCTCGGTGCAGTTCGCCCTCGCCCGCCTGGGCATCGACGAGCCGGACCTGGCGCGCCTGGAA
CACTTCATCGGCCCCCCGCTGTTGCAGTGCTTCATGCAGACCTACGGCTTCGACGAAGCGCGCGCCTGGGAG
GCGGTGAACCACTACCGCGAGCGCTTCAGGGTCACCGGTCTCTACGAGAACCGCGTGTTCGACGGCATTCCC
GAGCTGCTCGAAGCCCTGGTCGGACGCGGCCACACGCTCTACGTCGCGACCAGCAAGCCCGGCGTGTTCGCC
CGCGAGATCGCCCGCCACTTCGCCTTCGACCGTCACTTCAAGGCGATCTACGGCAGCGAGCTGGACGGCACG
CGCACGCACAAGGACGAACTGATCCGCCATCTGCTCGACAGCGAAGGCCTGGCAGCGGAGCATTGCCTGATG
ATCGGCGACCGCATGCACGACCTGCTCGGCGCCAGCCGCAACGGTGTCGCCTGCATCGGCGTCGGCTACGGC
TTCGGCAGCGAAGACGAACTGCGCGCGCACCAGCCGACCCATTACTGCGCCGACCTCGCCGCCCTGCGGCAG
GTATTGGAATCCCACTGA
Translation:
MRDATLRYPNILFDLDGTLTDPREGITRSVQFALARLGIDEPDLARLEHFIGPPLLQCFMQTYGFDEARAWE
AVNHYRERFRVTGLYENRVFDGIPELLEALVGRGHTLYVATSKPGVFAREIARHFAFDRHFKAIYGSELDGT
RTHKDELIRHLLDSEGLAAEHCLMIGDRMHDLLGASRNGVACIGVGYGFGSEDELRAHQPTHYCADLAALRQ
VLESH*
AnnotationID:3499GeneID:3491
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:55
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatase
Cell Localization:()
Synonyms:PA0065
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative hydrolase
Functional Category Confidence Code:5
COGs:COG0546
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65728.1|AE016198_15 (AE016774) hydrolase, haloacid dehalogenase-like family
           [Pseudomonas putida KT2440]
          Length = 216

 Score =  319 bits (817), Expect = 9e-87
 Identities = 156/207 (75%), Positives = 173/207 (83%)

>gb|AAP26098.1| (AE017031) hydrolase, haloacid dehalogenase-like family [Bacillus
           anthracis str. Ames]
          Length = 221

 Score =  203 bits (516), Expect = 7e-52
 Identities = 100/211 (47%), Positives = 140/211 (66%), Gaps = 1/211 (0%)

>gb|AAP09140.1| (AE017005) Phosphoglycolate phosphatase [Bacillus cereus ATCC
           14579]
          Length = 240

 Score =  197 bits (502), Expect = 3e-50
 Identities = 97/205 (47%), Positives = 137/205 (66%), Gaps = 1/205 (0%)






 
Structural Features:
COG0546, Gph, Predicted phosphatases 
CD-Length = 220 residues,  99.1% aligned
Score =  159 bits (403), Expect = 3e-40
Identities = 72/218 (33%), Positives = 97/218 (44%), Gaps = 3/218 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6985




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33417




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3491_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3491
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5569
                           PA0065_tr
                           translation of PA0065
                           221
                           99.09
                           99.54
                           0
                           1163.0
     

     
     
155402
                           gb|AAG03455.1|AE004446_3
                           (AE004446) hypothetical protein PA0065 [Pseudomonas aeruginosa PAO1]
                           221
                           99.09
                           99.54
                           0
                           1163.0
     

     
     
155403
                           gb|AAN65728.1|AE016198_15
                           (AE016774) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           221
                           70.58
                           78.73
                           5
                           812.0
     

     
     
155404
                           gb|AAP26098.1|
                           (AE017031) hydrolase, haloacid dehalogenase-like family [Bacillus anthracis str. Ames]
                           227
                           44.93
                           62.99
                           12
                           516.0
     

     
     
155410
                           gb|AAO82604.1|
                           (AE016956) hydrolase, haloacid dehalogenase-like family [Enterococcus faecalis V583]
                           226
                           43.80
                           58.40
                           14
                           442.0
     

     






      

          
GC ORFID: 46493How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0065Glimmer Score: 

          
Start: 5877078Stop: 5876413

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0065 translation of PA0065Homolog Bit Score 452.0

          
Other Homologs:  t_PA0065 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGACGCCACGCTGCGCTACCCGAACATCCTCTTCGATCTCGACGGCACCCTCACCGACCCGCGCGAG 
GGCATCACCCGCTCGGTGCAGTTCGCCCTCGCCCGCCTGGGCATCGACGAGCCGGACCTGGCGCGCCTGGAA 
CACTTCATCGGCCCCCCGCTGTTGCAGTGCTTCATGCAGACCTACGGCTTCGACGAAGCGCGCGCCTGGGAG 
GCGGTGAACCACTACCGCGAGCGCTTCAGGGTCACCGGTCTCTACGAGAACCGCGTGTTCGACGGCATTCCC 
GAGCTGCTCGAAGCCCTGGTCGGACGCGGCCACACGCTCTACGTCGCGACCAGCAAGCCCGGCGTGTTCGCC 
CGCGAGATCGCCCGCCACTTCGCCTTCGACCGTCACTTCAAGGCGATCTACGGCAGCGAGCTGGACGGCACG 
CGCACGCACAAGGACGAACTGATCCGCCATCTGCTCGACAGCGAAGGCCTGGCAGCGGAGCATTGCCTGATG 
ATCGGCGACCGCATGCACGACCTGCTCGGCGCCAGCCGCAACGGTGTCGCCTGCATCGGCGTCGGCTACGGC 
TTCGGCAGCGAAGACGAACTGCGCGCGCACCAGCCGACCCATTACTGCGCCGACCTCGCCGCCCTGCGGCAG 
GTATTGGAATCCCACTGA