ViewGene

Locus Name:
GeneID:
Location:

GeneID:3490
TrivialName: PA14_64310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64310
PAO1 Ortholog Locus:PA4862
Sequence Length:699
Protein Length:232
Start: 5732184
Stop: 5732882
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08247.1|AE004900_1 (AE004900) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 231/232 (99%)
Sequence:
ATGCTGCAAGTCGACAAGCTGCACCAGTACTACGGCGGTAGCCATATCCTCCGTGGCCTGAGCTTCGAGGCG
AAGGTAGGCGAGGTGACCTGCCTGCTCGGTCGCAACGGGGTGGGCAAGACCACCCTGCTGCGCTGCCTGATG
GGCCTGGTCCCGGCCCGCGAGGGCCAGGTCGCCTGGGAAGGCCGTTCGCTCACCGGACTCAGGCCGCACCAG
CGGGTCCGCGCCGGGATCGCCTACGTGCCGCAGGGACGGGAAATCTTCCCCCGGCTGACGGTGGAAGAGAAC
CTGCTGATGGGACTGTCCCGTTTCAGCGCCAGGGACGCCCGGGCGGTGCCGGACTTCATCTACGAGCTGTTC
CCGGTCCTGCGCGAAATGAAACAGCGCCGCGGCGGCGACCTCTCCGGCGGCCAGCAGCAGCAACTGGCGATC
GGCCGCGCCCTGGCCAGCCAGCCGCGACTGCTGATCCTCGACGAACCCACGGAAGGCATCCAGCCTTCGGTG
ATCAAGGAGATCGGCACGGTCGTCCGCAGCCTGGCGGCGCGCGGCGACATGGCGATCCTGCTGGTCGAGCAG
TTCTACGACTTCGCCGCCGAACTGGCCGACCAATACCTGGTGATGGCGCGCGGCGAGATCGTCCAGCAGGGC
CGCGGCCGCGACATGGAGAGCGAGGGCGTGCGCGGGCTGGTGGCGATTTGA
Translation:
MLQVDKLHQYYGGSHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGLVPAREGQVAWEGRSLTGLRPHQ
RVRAGIAYVPQGREIFPRLTVEENLLMGLSRFSARDARAVPDFIYELFPVLREMKQRRGGDLSGGQQQQLAI
GRALASQPRLLILDEPTEGIQPSVIKEIGTVVRSLAARGDMAILLVEQFYDFAAELADQYLVMARGEIVQQG
RGRDMESEGVRGLVAI*
AnnotationID:3498GeneID:3490
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:37
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transport ATP-binding subunit
Cell Localization:()
Synonyms:PA4862
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0410,cd00267,pfam00005
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70414.1|AE016683_5 (AE016792) branched-chain amino acid ABC transporter, ATP-binding
           protein, putative [Pseudomonas putida KT2440]
          Length = 232

 Score =  399 bits (1025), Expect = e-111
 Identities = 197/232 (84%), Positives = 215/232 (92%)

>gb|AAO58318.1| (AE016873) branched-chain amino acid ABC transporter, ATP-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 232

 Score =  391 bits (1005), Expect = e-108
 Identities = 195/232 (84%), Positives = 213/232 (91%)

>gb|AAM86549.1|AE013901_10 (AE013901) ATP-binding component of  ABC transporter [Yersinia
           pestis KIM]
          Length = 253

 Score =  365 bits (938), Expect = e-101
 Identities = 180/232 (77%), Positives = 208/232 (89%)
Structural Features:
COG0410, LivF, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 237 residues,  94.9% aligned
Score =  306 bits (786), Expect = 1e-84
Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  99.1% aligned
Score =  158 bits (401), Expect = 6e-40
Identities = 72/218 (33%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues, 100.0% aligned
Score =  136 bits (344), Expect = 2e-33
Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Genomic Context:
Comment:
ReferenceID:6983
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24125
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38064
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3490_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3490

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5566 PA4862_tr translation of PA4862 232 99.56 99.56 0 1163.0
155250 gb|AAG08247.1|AE004900_1 (AE004900) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] 232 99.56 99.56 0 1163.0
155251 gb|AAN70414.1|AE016683_5 (AE016792) branched-chain amino acid ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440] 232 84.91 92.67 0 1025.0
155252 gb|AAO58318.1| (AE016873) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 232 84.05 91.81 0 1005.0
155254 emb|CAC90032.1| (AJ414147) putative ABC transport ATP-binding subunit [Yersinia pestis CO92] 232 77.58 89.65 0 938.0
GC ORFID: 46492How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4862Glimmer Score:
Start: 4995864Stop: 4996562
Length: 699
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4862 translation of PA4862Homolog Bit Score 452.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5801 (ORF: BLASTX 383.0), t_PA1070 (ORF: BLASTX 176.0), psyr_15may02_Scaffold5_revised_gene6077 (ORF: BLASTX 172.0), t_PA4909 (ORF: BLASTX 163.0), psyr_15may02_Scaffold6_revised_gene6562 (ORF: BLASTX 121.0), t_PA4862 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCAAGTCGACAAGCTGCACCAGTACTACGGCGGTAGCCATATCCTCCGTGGCCTGAGCTTCGAGGCG
AAGGTAGGCGAGGTGACCTGCCTGCTCGGTCGCAACGGGGTGGGCAAGACCACCCTGCTGCGCTGCCTGATG
GGCCTGGTCCCGGCCCGCGAGGGCCAGGTCGCCTGGGAAGGCCGTTCGCTCACCGGACTCAGGCCGCACCAG
CGGGTCCGCGCCGGGATCGCCTACGTGCCGCAGGGACGGGAAATCTTCCCCCGGCTGACGGTGGAAGAGAAC
CTGCTGATGGGACTGTCCCGTTTCAGCGCCAGGGACGCCCGGGCGGTGCCGGACTTCATCTACGAGCTGTTC
CCGGTCCTGCGCGAAATGAAACAGCGCCGCGGCGGCGACCTCTCCGGCGGCCAGCAGCAGCAACTGGCGATC
GGCCGCGCCCTGGCCAGCCAGCCGCGACTGCTGATCCTCGACGAACCCACGGAAGGCATCCAGCCTTCGGTG
ATCAAGGAGATCGGCACGGTCGTCCGCAGCCTGGCGGCGCGCGGCGACATGGCGATCCTGCTGGTCGAGCAG
TTCTACGACTTCGCCGCCGAACTGGCCGACCAATACCTGGTGATGGCGCGCGGCGAGATCGTCCAGCAGGGC
CGCGGCCGCGACATGGAGAGCGAGGGCGTGCGCGGGCTGGTGGCGATTTGA