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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08247.1|AE004900_1 (AE004900) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 231/232 (99%)
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Sequence:
ATGCTGCAAGTCGACAAGCTGCACCAGTACTACGGCGGTAGCCATATCCTCCGTGGCCTGAGCTTCGAGGCG
AAGGTAGGCGAGGTGACCTGCCTGCTCGGTCGCAACGGGGTGGGCAAGACCACCCTGCTGCGCTGCCTGATG
GGCCTGGTCCCGGCCCGCGAGGGCCAGGTCGCCTGGGAAGGCCGTTCGCTCACCGGACTCAGGCCGCACCAG
CGGGTCCGCGCCGGGATCGCCTACGTGCCGCAGGGACGGGAAATCTTCCCCCGGCTGACGGTGGAAGAGAAC
CTGCTGATGGGACTGTCCCGTTTCAGCGCCAGGGACGCCCGGGCGGTGCCGGACTTCATCTACGAGCTGTTC
CCGGTCCTGCGCGAAATGAAACAGCGCCGCGGCGGCGACCTCTCCGGCGGCCAGCAGCAGCAACTGGCGATC
GGCCGCGCCCTGGCCAGCCAGCCGCGACTGCTGATCCTCGACGAACCCACGGAAGGCATCCAGCCTTCGGTG
ATCAAGGAGATCGGCACGGTCGTCCGCAGCCTGGCGGCGCGCGGCGACATGGCGATCCTGCTGGTCGAGCAG
TTCTACGACTTCGCCGCCGAACTGGCCGACCAATACCTGGTGATGGCGCGCGGCGAGATCGTCCAGCAGGGC
CGCGGCCGCGACATGGAGAGCGAGGGCGTGCGCGGGCTGGTGGCGATTTGA |
Translation:
MLQVDKLHQYYGGSHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGLVPAREGQVAWEGRSLTGLRPHQ
RVRAGIAYVPQGREIFPRLTVEENLLMGLSRFSARDARAVPDFIYELFPVLREMKQRRGGDLSGGQQQQLAI
GRALASQPRLLILDEPTEGIQPSVIKEIGTVVRSLAARGDMAILLVEQFYDFAAELADQYLVMARGEIVQQG
RGRDMESEGVRGLVAI* |
AnnotationID:3498 | GeneID:3490 |
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Modification Date/Time: |
2005-03-11 11:11:37 |
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GeneProduct: | putative ABC transport ATP-binding subunit |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN70414.1|AE016683_5 (AE016792) branched-chain amino acid ABC transporter, ATP-binding
protein, putative [Pseudomonas putida KT2440]
Length = 232
Score = 399 bits (1025), Expect = e-111
Identities = 197/232 (84%), Positives = 215/232 (92%)
>gb|AAO58318.1| (AE016873) branched-chain amino acid ABC transporter, ATP-binding
protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 232
Score = 391 bits (1005), Expect = e-108
Identities = 195/232 (84%), Positives = 213/232 (91%)
>gb|AAM86549.1|AE013901_10 (AE013901) ATP-binding component of ABC transporter [Yersinia
pestis KIM]
Length = 253
Score = 365 bits (938), Expect = e-101
Identities = 180/232 (77%), Positives = 208/232 (89%) |
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Structural Features: | COG0410, LivF, ABC-type branched-chain amino acid transport systems,
ATPase component
[Amino acid transport and metabolism]
CD-Length = 237 residues, 94.9% aligned
Score = 306 bits (786), Expect = 1e-84
Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 99.1% aligned
Score = 158 bits (401), Expect = 6e-40
Identities = 72/218 (33%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues, 100.0% aligned
Score = 136 bits (344), Expect = 2e-33
Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 5/186 (2%) |
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