ViewGene
Locus Name:
GeneID:
Location:

GeneID:3488
TrivialName: PA14_20490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20490
PAO1 Ortholog Locus:PA3368
Sequence Length:666
Protein Length:221
Start: 1760562
Stop: 1759897
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06756.1|AE004759_3 (AE004759) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGCTCTATCCAATTGAGCTACCGGGACACGCCGGACATGGCGAGCGGTGCGCCGCGTCCGGGCGGCATGTT
AACGGCAGAGAAAGCGTTTGTCATGCCACTGCCACCAAGGCTGCGCATAATTTTCCGCAACCCTGGAGGTGC
AGCATGAACCAGACCGTCGCCATTCCCGCCGCACAGGACCTGCCGGACGCCCCGCGCCAGCCGCGGATACCG
GACTCCCCCTTCGCCAGCTTCGACGTGCGGATCGCCAGCGAGCACGACGCGCCGCGCCTGTCGTTGCTGCTA
CAGCAACTCGGTAGCGCCGATCCGCGCCCGGACCCGGCGTTGCTGGCCATCCAGCTGCAACGACCGCGCGGC
GACCGGGTCACCCTGGTGGCCGAGCGCGGCGAGCGCCTGCTCGGCACCTGCACCCTGCATCTGATCGAACAC
CTGGCGCACGATTTCGCCCGCTCGGCGATTCTCGAAGACATGGTGGTCGACCGCCACGCCCGCGGCCAGGGC
GTAGGCCGCGAGCTGATCGGCCGGGCCGTGGAGCGCGCGCGCAGTTGGGGCTGCTACAAACTGGCGCTTTCC
AGTCACCAGGACCGGGAAACCGCGCAGCGCTTCTATGCCGCGCTAGGGTTCACCAGCCACGGCGTAAGCCTG
GCGCTGCATCTGGGCTGA
Translation:
MLYPIELPGHAGHGERCAASGRHVNGRESVCHATATKAAHNFPQPWRCSMNQTVAIPAAQDLPDAPRQPRIP
DSPFASFDVRIASEHDAPRLSLLLQQLGSADPRPDPALLAIQLQRPRGDRVTLVAERGERLLGTCTLHLIEH
LAHDFARSAILEDMVVDRHARGQGVGRELIGRAVERARSWGCYKLALSSHQDRETAQRFYAALGFTSHGVSL
ALHLG*
AnnotationID:3496GeneID:3488
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 07:07:49
Gene Name:
Confidence Code:3
GeneProduct:putatative acetyltransferase
Cell Localization:()
Synonyms:PA3368
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC71994.1| (AP005038) putative transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 150

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

>dbj|BAB73922.1| (AP003588) ORF_ID:all2223~putative acetyltransferase [Nostoc sp.
           PCC 7120]
          Length = 153

 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 2/140 (1%)






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues, 100.0% aligned
Score = 67.6 bits (165), Expect = 1e-12
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32191




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3488_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3488
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5564
                           PA3368_tr
                           translation of PA3368
                           221
                           99.99
                           99.99
                           0
                           1163.0
     

     
     
155203
                           gb|AAG06756.1|AE004759_3
                           (AE004759) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           221
                           99.99
                           99.99
                           0
                           1163.0
     

     






      

          
GC ORFID: 46490How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3368Glimmer Score: 

          
Start: 3193370Stop: 3194035

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3368 translation of PA3368Homolog Bit Score 452.0

          
Other Homologs:  t_PA3368 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTATCCAATTGAGCTACCGGGACACGCCGGACATGGCGAGCGGTGCGCCGCGTCCGGGCGGCATGTT 
AACGGCAGAGAAAGCGTTTGTCATGCCACTGCCACCAAGGCTGCGCATAATTTTCCGCAACCCTGGAGGTGC 
AGCATGAACCAGACCGTCGCCATTCCCGCCGCACAGGACCTGCCGGACGCCCCGCGCCAGCCGCGGATACCG 
GACTCCCCCTTCGCCAGCTTCGACGTGCGGATCGCCAGCGAGCACGACGCGCCGCGCCTGTCGTTGCTGCTA 
CAGCAACTCGGTAGCGCCGATCCGCGCCCGGACCCGGCGTTGCTGGCCATCCAGCTGCAACGACCGCGCGGC 
GACCGGGTCACCCTGGTGGCCGAGCGCGGCGAGCGCCTGCTCGGCACCTGCACCCTGCATCTGATCGAACAC 
CTGGCGCACGATTTCGCCCGCTCGGCGATTCTCGAAGACATGGTGGTCGACCGCCACGCCCGCGGCCAGGGC 
GTAGGCCGCGAGCTGATCGGCCGGGCCGTGGAGCGCGCGCGCAGTTGGGGCTGCTACAAACTGGCGCTTTCC 
AGTCACCAGGACCGGGAAACCGCGCAGCGCTTCTATGCCGCGCTAGGGTTCACCAGCCACGGCGTAAGCCTG 
GCGCTGCATCTGGGCTGA