ViewGene

Locus Name:
GeneID:
Location:

GeneID:3487
TrivialName: PA14_68080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68080
PAO1 Ortholog Locus:PA5154
Sequence Length:696
Protein Length:231
Start: 6074299
Stop: 6074994
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08539.1|AE004928_5 (AE004928) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 231/231 (100%), Positives = 231/231 (100%)
Sequence:
ATGATTCTCGACCTGCATGGGTTCGGCGAGCAACTGCTCGCCGGTACCTGGATGACCCTCAAGCTGTCGCTG
GCGGCGGTCTGCGTGGGGCTGTTGCTCGGCCTCCTCGGCGCCATCGCGAAGACTTCGAAGTACGCGGCCCTG
CGCTTCCTCGGCGGCACCTACACCACCATCGTCCGTGGCGTGCCGGAAACGCTCTGGGTACTGATGATCTAT
TTCGGCACGGTGAGCGGCCTGAACGCCCTCGGCGACCTTTTCGGCAAGCCGGACCTGGCACTCTCGCCGTTC
GCCGCCGGCACCCTGGCCCTCGGCCTGTGCTTCGGCGCCTACGCCACCGAGGTGTTCCGCGGCGCGCTGTTG
TCCATTCCGCGCGGCCATCGCGAGGCCGGCCAGGCGCTCGGCCTGTCGCCCGGACGGATCTTCTGGCGCATC
GTCCTGCCGCAGATCTGGCGGGTCGCCCTGCCCGGCCTCGGCAACCTGTACCTGATCCTGCTGAAGGACACC
GCGCTGGTGTCGCTGATCACCCTCGACGAGATCATGCGCAAGGCGCAGGTCGCCTCCAACGCGACCAAGGAA
CCCTTCACCTTCTACATGACCGCGGCCGCCATCTACCTGAGCCTCACGGTCGTCATCATGGTCGCCCTGCAC
TTCCTCGAACGTCGCGCCGGCCGTGGTTTCGTGAGGAACGAGCTATGA
Translation:
MILDLHGFGEQLLAGTWMTLKLSLAAVCVGLLLGLLGAIAKTSKYAALRFLGGTYTTIVRGVPETLWVLMIY
FGTVSGLNALGDLFGKPDLALSPFAAGTLALGLCFGAYATEVFRGALLSIPRGHREAGQALGLSPGRIFWRI
VLPQIWRVALPGLGNLYLILLKDTALVSLITLDEIMRKAQVASNATKEPFTFYMTAAAIYLSLTVVIMVALH
FLERRAGRGFVRNEL*
AnnotationID:3495GeneID:3487
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:19
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, permease protein
Cell Localization:()
Synonyms:PA5154
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4215,COG0765,COG4160
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58784.1| (AE016875) amino acid ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 231

 Score =  325 bits (832), Expect = 2e-88
 Identities = 155/229 (67%), Positives = 198/229 (86%)

>gb|AAN65912.1|AE016219_5 (AE016775) amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 230

 Score =  318 bits (814), Expect = 2e-86
 Identities = 154/230 (66%), Positives = 190/230 (82%)

>gb|AAO90032.1| (AE016961) amino acid ABC transporter, permease protein [Coxiella
           burnetii RSA 493]
          Length = 221

 Score =  188 bits (477), Expect = 2e-47
 Identities = 105/214 (49%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Structural Features:
COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues, 100.0% aligned
Score =  268 bits (688), Expect = 2e-73
Identities = 134/230 (58%), Positives = 171/230 (74%), Gaps = 3/230 (1%)

COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  96.8% aligned
Score =  176 bits (447), Expect = 3e-45
Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  94.7% aligned
Score =  137 bits (346), Expect = 1e-33
Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 1/217 (0%)
Genomic Context:
Comment:
ReferenceID:6977
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24119
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34921
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3487_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3487

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5561 PA5154_tr translation of PA5154 231 99.99 99.99 0 1165.0
155136 gb|AAG08539.1|AE004928_5 (AE004928) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 231 99.99 99.99 0 1165.0
155137 gb|AAO58784.1| (AE016875) amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 231 67.09 85.71 0 829.0
155138 gb|AAN65912.1|AE016219_5 (AE016775) amino acid ABC transporter, permease protein [Pseudomonas putida KT2440] 231 66.66 82.25 1 814.0
155145 gb|AAO90032.1| (AE016961) amino acid ABC transporter, permease protein [Coxiella burnetii RSA 493] 234 45.72 62.82 16 475.0
GC ORFID: 46489How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5154Glimmer Score:
Start: 5337985Stop: 5338680
Length: 696
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5154 translation of PA5154Homolog Bit Score 453.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6952 (ORF: BLASTX 319.0), psyr_15may02_Scaffold8_revised_gene7809 (ORF: BLASTX 202.0), t_PA0889 (ORF: BLASTX 191.0), t_PA2924 (ORF: BLASTX 184.0), t_PA5154 (ORF: GLIMMER)
GC ORF Sequence
ATGATTCTCGACCTGCATGGGTTCGGCGAGCAACTGCTCGCCGGTACCTGGATGACCCTCAAGCTGTCGCTG
GCGGCGGTCTGCGTGGGGCTGTTGCTCGGCCTCCTCGGCGCCATCGCGAAGACTTCGAAGTACGCGGCCCTG
CGCTTCCTCGGCGGCACCTACACCACCATCGTCCGTGGCGTGCCGGAAACGCTCTGGGTACTGATGATCTAT
TTCGGCACGGTGAGCGGCCTGAACGCCCTCGGCGACCTTTTCGGCAAGCCGGACCTGGCACTCTCGCCGTTC
GCCGCCGGCACCCTGGCCCTCGGCCTGTGCTTCGGCGCCTACGCCACCGAGGTGTTCCGCGGCGCGCTGTTG
TCCATTCCGCGCGGCCATCGCGAGGCCGGCCAGGCGCTCGGCCTGTCGCCCGGACGGATCTTCTGGCGCATC
GTCCTGCCGCAGATCTGGCGGGTCGCCCTGCCCGGCCTCGGCAACCTGTACCTGATCCTGCTGAAGGACACC
GCGCTGGTGTCGCTGATCACCCTCGACGAGATCATGCGCAAGGCGCAGGTCGCCTCCAACGCGACCAAGGAA
CCCTTCACCTTCTACATGACCGCGGCCGCCATCTACCTGAGCCTCACGGTCGTCATCATGGTCGCCCTGCAC
TTCCTCGAACGTCGCGCCGGCCGTGGTTTCGTGAGGAACGAGCTATGA