ViewGene
Locus Name:
GeneID:
Location:

GeneID:3486
TrivialName: PA14_64570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64570
PAO1 Ortholog Locus:PA4885
Sequence Length:690
Protein Length:229
Start: 5751808
Stop: 5752497
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08270.1|AE004901_12 (AE004901) two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 228/229 (99%), Positives = 228/229 (99%)
Sequence:
ATGCGCATCCTGGTGATCGAAGACGATACGAAGACCGGCGAGTACCTGAAGAAGGGCCTCGGCGAGTCGGGC
TATGCGGTCGACTGGTCGCAGCACGGCGCCGACGGTCTCTACCTGGCGCTGGAGAACCGCTACGACCTGGTG
GTCCTCGACGTGATGCTGCCCGGCCTGGACGGTTGGCAGATCATGGAAGTGCTGCGCAAGAAGCACGATGTG
CCGGTGCTCTTCCTCACCGCCCGCGACCAGTTGCAAGACCGTATCCGCGGCCTCGAACTGGGTGCCGACGAC
TACCTGGTGAAACCCTTCTCCTTCACCGAGTTGCTGCTGCGTATCCGTACCCTGCTGCGCCGCGGCGTGGTC
CGCGAGGCAGAGCAGGTGCAACTGGCCGATCTGCACCTGGACGTGCTGCGGCGCAAGGTCAGCCGCCAGGGG
CAGGTGATCGCCCTGACCAACAAGGAGTTCGCCCTCCTGCACCTGCTGATGCGCCGCGAGGGCGAGGTGCTG
TCGCGCACCCTGATCGCCTCGGAGGTCTGGGACATGAACTTCGACAGCGACACCAACGTCGTCGACGTGGCG
ATCAAGCGCCTGCGCGCCAAGGTCGACAATCCCTTCCCGAACAAGCTGATCCATACCGTGCGCGGCATCGGC
TACGTCTGCGAGGAGCGCCCGTGCCCGCCCGCCGCTCCCTGA
Translation:
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDV
PVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLHLDVLRRKVSRQG
QVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIG
YVCEERPCPPAAP*
AnnotationID:3494GeneID:3486
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:19
Gene Name:irlR
Confidence Code:2
GeneProduct:two-component response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:DNA-binding heavy metal response regulator
Functional Category Confidence Code:5
COGs:COG0745,cd00156
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57077.1| (AE016868) DNA-binding heavy metal response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 229

 Score =  392 bits (1007), Expect = e-109
 Identities = 194/229 (84%), Positives = 211/229 (92%)

>emb|CAE34905.1| (BX640450) response regulatory protein [Bordetella bronchiseptica]
          Length = 223

 Score =  324 bits (831), Expect = 2e-88
 Identities = 163/223 (73%), Positives = 188/223 (84%)

>emb|CAD17640.1| (AL646079) PROBABLE RESPONSE REGULATOR FOR COBALT ZINC CADMIUM
           RESISTANCE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 224

 Score =  302 bits (774), Expect = 9e-82
 Identities = 142/220 (64%), Positives = 188/220 (85%)






 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  220 bits (562), Expect = 1e-58
Identities = 109/230 (47%), Positives = 138/230 (60%), Gaps = 8/230 (3%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  108 bits (270), Expect = 8e-25
Identities = 50/113 (44%), Positives = 76/113 (67%), Gaps = 1/113 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6975




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35174




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3486_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3486
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5553
                           PA4885_tr
                           translation of PA4885
                           229
                           99.56
                           99.56
                           0
                           1165.0
     

     
     
154835
                           gb|AAG08270.1|AE004901_12
                           (AE004901) two-component response regulator [Pseudomonas aeruginosa PAO1]
                           229
                           99.56
                           99.56
                           0
                           1165.0
     

     
     
154836
                           gb|AAO57077.1|
                           (AE016868) DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           229
                           84.71
                           92.13
                           0
                           1007.0
     

     
     
154837
                           emb|CAE34905.1|
                           (BX640450) response regulatory protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           229
                           71.17
                           82.09
                           6
                           831.0
     

     
     
154840
                           emb|CAD17806.1|
                           (AL646080) PROBABLE TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           231
                           64.93
                           80.51
                           5
                           743.0
     

     






      

          
GC ORFID: 46488How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4885Glimmer Score: 

          
Start: 5015489Stop: 5016178

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4885 translation of PA4885Homolog Bit Score 453.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 392.0), t_PA2809 (ORF: BLASTX 288.0), t_PA1437 (ORF: BLASTX 265.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 265.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 265.0), t_PA2523 (ORF: BLASTX 253.0), psyr_15may02_Scaffold11_revised_gene1928 (ORF: BLASTX 179.0), t_PA4381 (ORF: BLASTX 167.0), psyr_15may02_Scaffold12_revised_gene2057 (ORF: BLASTX 166.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 162.0), psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 157.0), t_PA4776 (ORF: BLASTX 156.0), t_PA1157 (ORF: BLASTX 145.0), t_PA2657 (ORF: BLASTX 144.0), t_PA4885 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATCCTGGTGATCGAAGACGATACGAAGACCGGCGAGTACCTGAAGAAGGGCCTCGGCGAGTCGGGC 
TATGCGGTCGACTGGTCGCAGCACGGCGCCGACGGTCTCTACCTGGCGCTGGAGAACCGCTACGACCTGGTG 
GTCCTCGACGTGATGCTGCCCGGCCTGGACGGTTGGCAGATCATGGAAGTGCTGCGCAAGAAGCACGATGTG 
CCGGTGCTCTTCCTCACCGCCCGCGACCAGTTGCAAGACCGTATCCGCGGCCTCGAACTGGGTGCCGACGAC 
TACCTGGTGAAACCCTTCTCCTTCACCGAGTTGCTGCTGCGTATCCGTACCCTGCTGCGCCGCGGCGTGGTC 
CGCGAGGCAGAGCAGGTGCAACTGGCCGATCTGCACCTGGACGTGCTGCGGCGCAAGGTCAGCCGCCAGGGG 
CAGGTGATCGCCCTGACCAACAAGGAGTTCGCCCTCCTGCACCTGCTGATGCGCCGCGAGGGCGAGGTGCTG 
TCGCGCACCCTGATCGCCTCGGAGGTCTGGGACATGAACTTCGACAGCGACACCAACGTCGTCGACGTGGCG 
ATCAAGCGCCTGCGCGCCAAGGTCGACAATCCCTTCCCGAACAAGCTGATCCATACCGTGCGCGGCATCGGC 
TACGTCTGCGAGGAGCGCCCGTGCCCGCCCGCCGCTCCCTGA