ViewGene
Locus Name:
GeneID:
Location:

GeneID:3484
TrivialName: PA14_25180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25180
PAO1 Ortholog Locus:PA3006
Sequence Length:702
Protein Length:233
Start: 2201686
Stop: 2202387
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06394.1|AE004725_7 (AE004725) transcriptional regulator PsrA [Pseudomonas aeruginosa PAO1]
Identities = 233/233 (100%), Positives = 233/233 (100%)
Sequence:
ATGGCCCAGTCGGAAACCGTCGAACGCATTCTCGATGCGGCGGAACAGCTGTTCGCGGAAAAAGGCTTCGCC
GAAACCTCGTTGCGTCTGATCACCAGCAAGGCCGGGGTCAACCTGGCGGCGGTGAATTATCACTTCGGTTCG
AAGAAGGCGCTGATCCAGGCGGTGTTCTCGCGCTTCCTCGGGCCATTCTGCGCCAGCCTGGAAAAGGAGCTG
GATCGTCGCCAGGCCAAGCCCGAGGCCCAGCACGCCACCCTGGAGGACCTCCTGCACCTGCTGGTGTCCCAG
GCGATGGCGGTGAAGCCGCGCAGCGGCAACGACCTGTCGATCTTCATGCGCTTGCTCGGCCTGGCCTTCAGC
CAGAGCCAGGGGCACCTGCGCAAGTACCTGGAAGAGGTCTACGGCAAGGTCTTCCGGCGCTACATGCTGCTG
GTCAACGAGGCGGCGCCGAAGCTGCCGCCCATCGAGCTGTTCTGGCGCGTGCACTTCATGCTCGGCGCGGCC
GCCTTCAGCATGTCGGGGATCAAGGCCCTGCGGGCGATGGCGGAAACCGATTTCGGCGTGAACACTTCCACC
GAGCAGGTGATGCACCTGATGGTGCCGTTCTTCGCCGCCGGCATGCGCGCCGAGAGCGGCATCGACGATCCG
CTGCTGGCCGGGGCGCAACTGCGCCCGCGGAACAAGACGCCCGCCAAGGCCTGA
Translation:
MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKEL
DRRQAKPEAQHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLL
VNEAAPKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGMRAESGIDDP
LLAGAQLRPRNKTPAKA*
AnnotationID:3492GeneID:3484
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:40
Gene Name:psrA
Confidence Code:1
GeneProduct:transcriptional regulator PsrA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:transcriptional regulator, TetR family
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC17801.1| (AJ293485) PsrA protein [Pseudomonas putida]
          Length = 237

 Score =  386 bits (992), Expect = e-107
 Identities = 196/233 (84%), Positives = 217/233 (93%), Gaps = 1/233 (0%)

>gb|AAN67757.1|AE016407_1 (AE016782) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 235

 Score =  384 bits (985), Expect = e-106
 Identities = 195/229 (85%), Positives = 215/229 (93%), Gaps = 1/229 (0%)

>gb|AAO56983.1| (AE016868) transcriptional regulator PsrA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 238

 Score =  379 bits (974), Expect = e-105
 Identities = 196/237 (82%), Positives = 214/237 (90%), Gaps = 5/237 (2%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 58.0 bits (141), Expect = 8e-10
Identities = 23/47 (48%), Positives = 34/47 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6971




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36042




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3484_cdd.html


    		




 
URL:

















    ReferenceID:36476




  
Author/Investigator(s):
        Kojic M, Venturi V.





  
Title:
        Regulation of rpoS gene expression in Pseudomonas: involvement of a TetR family regulator.




  
PubMed:
        11371535


MedLine:
        




    
Source:
J Bacteriol. 2001 Jun;183(12):3712-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11371535









           
Homologs By Global Alignment 

           

       



     
Gene ID:3484
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5551
                           PA3006_tr
                           translation of PA3006
                           233
                           99.99
                           99.99
                           0
                           1166.0
     

     
     
154574
                           gb|AAG06394.1|AE004725_7
                           (AE004725) transcriptional regulator PsrA [Pseudomonas aeruginosa PAO1]
                           233
                           99.99
                           99.99
                           0
                           1166.0
     

     
     
154576
                           gb|AAN67757.1|AE016407_1
                           (AE016782) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           236
                           83.89
                           91.94
                           4
                           988.0
     

     
     
154577
                           gb|AAM52309.1|AF502251_2
                           (AF502251) PsrA protein [Pseudomonas chlororaphis]
                           236
                           83.05
                           92.37
                           4
                           984.0
     

     
     
154575
                           emb|CAC17801.1|
                           (AJ293485) PsrA protein [Pseudomonas putida]
                           238
                           82.35
                           91.17
                           6
                           994.0
     

     






      

          
GC ORFID: 46486How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3006Glimmer Score: 

          
Start: 2752241Stop: 2751540

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3006 translation of PA3006Homolog Bit Score 453.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8051 (ORF: BLASTX 380.0), t_PA3006 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCAGTCGGAAACCGTCGAACGCATTCTCGATGCGGCGGAACAGCTGTTCGCGGAAAAAGGCTTCGCC 
GAAACCTCGTTGCGTCTGATCACCAGCAAGGCCGGGGTCAACCTGGCGGCGGTGAATTATCACTTCGGTTCG 
AAGAAGGCGCTGATCCAGGCGGTGTTCTCGCGCTTCCTCGGGCCATTCTGCGCCAGCCTGGAAAAGGAGCTG 
GATCGTCGCCAGGCCAAGCCCGAGGCCCAGCACGCCACCCTGGAGGACCTCCTGCACCTGCTGGTGTCCCAG 
GCGATGGCGGTGAAGCCGCGCAGCGGCAACGACCTGTCGATCTTCATGCGCTTGCTCGGCCTGGCCTTCAGC 
CAGAGCCAGGGGCACCTGCGCAAGTACCTGGAAGAGGTCTACGGCAAGGTCTTCCGGCGCTACATGCTGCTG 
GTCAACGAGGCGGCGCCGAAGCTGCCGCCCATCGAGCTGTTCTGGCGCGTGCACTTCATGCTCGGCGCGGCC 
GCCTTCAGCATGTCGGGGATCAAGGCCCTGCGGGCGATGGCGGAAACCGATTTCGGCGTGAACACTTCCACC 
GAGCAGGTGATGCACCTGATGGTGCCGTTCTTCGCCGCCGGCATGCGCGCCGAGAGCGGCATCGACGATCCG 
CTGCTGGCCGGGGCGCAACTGCGCCCGCGGAACAAGACGCCCGCCAAGGCCTGA