ViewGene
Locus Name:
GeneID:
Location:

GeneID:3482
TrivialName: PA14_52780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52780
PAO1 Ortholog Locus:PA0889
Sequence Length:690
Protein Length:229
Start: 4678527
Stop: 4677838
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04278.1|AE004523_6 (AE004523) arginine/ornithine transport protein AotQ [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
ATGATCACTGGCTACGGTGCGACCATCGTCGATGGCGCCTGGCTGACTCTCCAGCTGGCCCTGCTTTCCATG
CTCCTGGCCATCGTCCTCGGCCTGCTGGGCGCGGCCTTCCGCCTGTCGCCGGTGCGCTGGCTGGCCTGGTGC
GGCGACCTGTACGCCACGGTAGTGCGCGGCATCCCCGACCTGGTGCTGATCCTGCTGATCTTCTACGGCGGC
CAGGGCCTGCTGAACTGGGTCGCCCCGCAACTCGGCTACGACGACTACATCGACCTGAATCCCTTCGTGTCC
GGCGTCGGCACCCTCGGCTTCATCTTCGGCGCCTATCTCTCGGAGACCTTCCGCGGCGCCTTCATGGCGATT
CCCAAGGGCCAGGGCGAGGCCGGCTACGCCTATGGCATGAGCCACCGCCAGGTGTTCTTCCGCATCCAGGTG
CCGCAGATGATCCGCCTGGCGATCCCCGGCTTCACCAACAACTGGCTGGTGCTGGTCAAGGCCACCGCGCTG
ATTTCCGTGGTCGGCCTGCAGGACATGATGTTCAAGGCCAAGCAGGCCTCCGATGCGACCCGCGAGCCGTTC
ACCTACTACCTCGCCGTGGCCGGCCTGTACCTGCTGGTGACCAGCGTGTCGCTGCTGTTGCTGCGCCTGCTC
GAACGCCGCTATTCGGTCGGCGTGAAAACCGCGGAACTGTGA
Translation:
MITGYGATIVDGAWLTLQLALLSMLLAIVLGLLGAAFRLSPVRWLAWCGDLYATVVRGIPDLVLILLIFYGG
QGLLNWVAPQLGYDDYIDLNPFVSGVGTLGFIFGAYLSETFRGAFMAIPKGQGEAGYAYGMSHRQVFFRIQV
PQMIRLAIPGFTNNWLVLVKATALISVVGLQDMMFKAKQASDATREPFTYYLAVAGLYLLVTSVSLLLLRLL
ERRYSVGVKTAEL*
AnnotationID:3490GeneID:3482
AnnotatorUID: diggins
Modification Date/Time: 2006-01-22 15:03:52
Gene Name:aotQ
Confidence Code:1
GeneProduct:arginine/ornithine transport protein AotQ
Cell Localization:()
Synonyms:PA0889
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4215,COG0765,COG4160
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70060.1|AE016645_6 (AE016790) basic amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 229

 Score =  385 bits (989), Expect = e-106
 Identities = 191/229 (83%), Positives = 209/229 (91%)

>gb|AAO55346.1| (AE016862) arginine/ornithine ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 229

 Score =  371 bits (953), Expect = e-102
 Identities = 185/229 (80%), Positives = 207/229 (90%)

>dbj|BAA16154.1| (D90862) HISTIDINE TRANSPORT SYSTEM PERMEASE PROTEIN HISQ.
           [Escherichia coli]
          Length = 228

 Score =  219 bits (559), Expect = 8e-57
 Identities = 114/229 (49%), Positives = 162/229 (70%), Gaps = 1/229 (0%)






 
Structural Features:
COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism].
CD-Length = 230 residues,  99.6% aligned
Score =  270 bits (691), Expect = 1e-73
Identities = 117/229 (51%), Positives = 165/229 (72%), Gaps = 2/229 (0%)

COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
Length = 222
Score =  168 bits (428), Expect = 9e-43
Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 11/223 (4%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
Length = 228
Score =  137 bits (346), Expect = 3e-33
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 2/219 (0%)






   
Genomic Context:
Arginine-ornithine transport locus, adjacent to arginine-ornithine catabolic locus






   
Comment:


















    ReferenceID:6967




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31998




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:38263




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3482_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3482
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5547
                           PA0889_tr
                           translation of PA0889
                           229
                           99.99
                           99.99
                           0
                           1165.0
     

     
     
154456
                           gb|AAG04278.1|AE004523_6
                           (AE004523) arginine/ornithine transport protein AotQ [Pseudomonas aeruginosa PAO1]
                           229
                           99.99
                           99.99
                           0
                           1165.0
     

     
     
154457
                           gb|AAC71071.1|
                           (AF012537) membrane protein [Pseudomonas aeruginosa]
                           229
                           99.56
                           99.56
                           0
                           1161.0
     

     
     
154458
                           gb|AAN70060.1|AE016645_6
                           (AE016790) basic amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           229
                           83.40
                           91.26
                           0
                           989.0
     

     
     
154459
                           gb|AAO55346.1|
                           (AE016862) arginine/ornithine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           229
                           80.78
                           90.39
                           0
                           953.0
     

     






      

          
GC ORFID: 46484How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0889Glimmer Score: 

          
Start: 275380Stop: 276069

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0889 translation of PA0889Homolog Bit Score 453.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7809 (ORF: BLASTX 371.0), t_PA2924 (ORF: BLASTX 199.0), t_PA5154 (ORF: BLASTX 193.0), psyr_15may02_Scaffold6_revised_gene6952 (ORF: BLASTX 185.0), t_PA0889 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCACTGGCTACGGTGCGACCATCGTCGATGGCGCCTGGCTGACTCTCCAGCTGGCCCTGCTTTCCATG 
CTCCTGGCCATCGTCCTCGGCCTGCTGGGCGCGGCCTTCCGCCTGTCGCCGGTGCGCTGGCTGGCCTGGTGC 
GGCGACCTGTACGCCACGGTAGTGCGCGGCATCCCCGACCTGGTGCTGATCCTGCTGATCTTCTACGGCGGC 
CAGGGCCTGCTGAACTGGGTCGCCCCGCAACTCGGCTACGACGACTACATCGACCTGAATCCCTTCGTGTCC 
GGCGTCGGCACCCTCGGCTTCATCTTCGGCGCCTATCTCTCGGAGACCTTCCGCGGCGCCTTCATGGCGATT 
CCCAAGGGCCAGGGCGAGGCCGGCTACGCCTATGGCATGAGCCACCGCCAGGTGTTCTTCCGCATCCAGGTG 
CCGCAGATGATCCGCCTGGCGATCCCCGGCTTCACCAACAACTGGCTGGTGCTGGTCAAGGCCACCGCGCTG 
ATTTCCGTGGTCGGCCTGCAGGACATGATGTTCAAGGCCAAGCAGGCCTCCGATGCGACCCGCGAGCCGTTC 
ACCTACTACCTCGCCGTGGCCGGCCTGTACCTGCTGGTGACCAGCGTGTCGCTGCTGTTGCTGCGCCTGCTC 
GAACGCCGCTATTCGGTCGGCGTGAAAACCGCGGAACTGTGA