ViewGene
Locus Name:
GeneID:
Location:

GeneID:3481
TrivialName: PA14_65030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65030
PAO1 Ortholog Locus:PA4924
Sequence Length:696
Protein Length:231
Start: 5795050
Stop: 5794355
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08309.1|AE004905_7 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/231 (98%), Positives = 229/231 (99%)
Sequence:
GTGTTCTTCAGATTGCTCTTGATCGCCGTCCTGCTGGCGGTATCCGCGTGCAGCTCCAAGGCTCCCGGCCCG
GGGGCGTCGGTGCCGAAGGTCGTGCGCGGCGAGTATCGCGTCAAGCGCGGCGACACCCTCTATTCGATCGCC
ACCCGGCACGGCTGGAACTACAAGGACCTGGCGCGCGCCAACGGCATCCGCCCGCCCTACGCGGTCAAGGTC
GGCCAGGTAGTGCGCTTCGACGGGCGCAAGTCGACCTACGTCGCCAGCAGCCGCTCCTCGTCGAGCAGCCGT
GCGCGCAAGTCGCCGCCTCCGCCGCCGTCGGTGACCCTGCGCGGCTGGCAGTGGCCGATGAAGGGGCCGGTG
ATCCGCCGCTTCTCCAGTTCCGACAAGCTCAACAAGGGCATCCGCATCGCCGGCACCCTGGGCCAGCCGGTA
CAGGCCTCGCTGGCCGGCAAGGTGGTGTTCGCGGTGAACAACATGCGTGGCTACGGCAACCTGGTGATCATC
CAGCACGGTACCTCGTACACCAGCACCTACGCGCACAACAGCCGCTTGCTGGTGAAGGAGGGGCAGATGGTC
AGCAAGGGCCAGAAGATCGCCGAGGCCGGTTCCTCGGATGCCGACCGGGTGCAACTGTACTTCGAGATCCGC
CAGAACGGCCGGCCGCTCGACCCGCTGAGCCTGCTGCCGCCGTCCTGA
Translation:
MFFRLLLIAVLLAVSACSSKAPGPGASVPKVVRGEYRVKRGDTLYSIATRHGWNYKDLARANGIRPPYAVKV
GQVVRFDGRKSTYVASSRSSSSSRARKSPPPPPSVTLRGWQWPMKGPVIRRFSSSDKLNKGIRIAGTLGQPV
QASLAGKVVFAVNNMRGYGNLVIIQHGTSYTSTYAHNSRLLVKEGQMVSKGQKIAEAGSSDADRVQLYFEIR
QNGRPLDPLSLLPPS*
AnnotationID:3489GeneID:3481
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:putative metalloendopeptidase-related membrane protein
Cell Localization:()
Synonyms:PA4924
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0739,pfam01551
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP97085.1| (AY336077) lipoprotein [Pseudomonas chlororaphis]
          Length = 294

 Score =  209 bits (533), Expect = 8e-54
 Identities = 120/261 (45%), Positives = 153/261 (58%), Gaps = 34/261 (13%)

>gb|AAO55084.1| (AE016861) lipoprotein NlpD, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 288

 Score =  206 bits (523), Expect = 1e-52
 Identities = 124/273 (45%), Positives = 159/273 (58%), Gaps = 47/273 (17%)






 
Structural Features:
COG0739, NlpD, Membrane proteins related to metalloendopeptidases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 277 residues,  94.9% aligned
Score =  102 bits (255), Expect = 2e-23
Identities = 80/263 (30%), Positives = 108/263 (41%), Gaps = 65/263 (24%)

pfam01551, Peptidase_M37, Peptidase family M23/M37. 
CD-Length = 83 residues,  98.8% aligned
Score = 94.9 bits (236), Expect = 8e-21
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14859




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35145




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3481_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5545
                           PA4924_tr
                           translation of PA4924
                           231
                           98.26
                           99.13
                           0
                           1168.0
     

     
     
154403
                           gb|AAG08309.1|AE004905_7
                           (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           231
                           97.83
                           99.13
                           0
                           1165.0
     

     
     
154408
                           gb|AAN67243.1|AE016351_5
                           (AE016780) lipoprotein NlpD [Pseudomonas putida KT2440]
                           268
                           44.40
                           57.83
                           43
                           536.0
     

     
     
154407
                           gb|AAO55084.1|
                           (AE016861) lipoprotein NlpD, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           44.29
                           56.40
                           59
                           550.0
     

     
     
154418
                           emb|CAD02868.1|
                           (AL627277) possible lipoprotein [Salmonella enterica subsp. enterica serovar Typhi]
                           262
                           42.36
                           54.19
                           43
                           470.0
     

     






      

          
GC ORFID: 46483How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4924Glimmer Score: 

          
Start: 5058731Stop: 5058036

          
Length: 696


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4924 translation of PA4924Homolog Bit Score 454.0

          
Other Homologs:  t_PA3623 (ORF: BLASTX 214.0), psyr_15may02_Scaffold3_revised_gene4652 (ORF: BLASTX 204.0), t_PA4924 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCTTCAGATTGCTCTTGATCGCCGTCCTGCTGGCGGTATCCGCGTGCAGCTCCAAGGCTCCCGGCCCG 
GGGGCGTCGGTGCCGAAGGTCGTGCGCGGCGAGTATCGCGTCAAGCGCGGCGACACCCTCTATTCGATCGCC 
ACCCGGCACGGCTGGAACTACAAGGACCTGGCGCGCGCCAACGGCATCCGCCCGCCCTACGCGGTCAAGGTC 
GGCCAGGTAGTGCGCTTCGACGGGCGCAAGTCGACCTACGTCGCCAGCAGCCGCTCCTCGTCGAGCAGCCGT 
GCGCGCAAGTCGCCGCCTCCGCCGCCGTCGGTGACCCTGCGCGGCTGGCAGTGGCCGATGAAGGGGCCGGTG 
ATCCGCCGCTTCTCCAGTTCCGACAAGCTCAACAAGGGCATCCGCATCGCCGGCACCCTGGGCCAGCCGGTA 
CAGGCCTCGCTGGCCGGCAAGGTGGTGTTCGCGGTGAACAACATGCGTGGCTACGGCAACCTGGTGATCATC 
CAGCACGGTACCTCGTACACCAGCACCTACGCGCACAACAGCCGCTTGCTGGTGAAGGAGGGGCAGATGGTC 
AGCAAGGGCCAGAAGATCGCCGAGGCCGGTTCCTCGGATGCCGACCGGGTGCAACTGTACTTCGAGATCCGC 
CAGAACGGCCGGCCGCTCGACCCGCTGAGCCTGCTGCCGCCGTCCTGA