ViewGene
Locus Name:
GeneID:
Location:

GeneID:3480
TrivialName: PA14_58530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58530
PAO1 Ortholog Locus:PA4510
Sequence Length:678
Protein Length:225
Start: 5212475
Stop: 5211798
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07898.1|AE004864_10 (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 222/225 (98%), Positives = 223/225 (99%)
Sequence:
GTGATCCGCATCGAACCCGCTGGTGCCGAAGCCCTGCTGCTGACGCTCGCCGAAGAGCCCGAAGTGGACCTG
TCTGTGCGCCTGGCCGAGCTGGCCAGACGTCTGCGCGAGGGGCTTGGCGAAGGCGTCAGGGATCTGGTGCCG
GGCTGGACCACCCTGATGCTGCATTACGACCCCTACCGCATCGCCCCGCAGGTACTGGAAGAACGCCTGGGT
CCGCTGCTGGCGGAGTGGCACGCCTGGCGCCCCGCCGAGGATGCCGGGCGCCTGCACGAGATTCCCGTCTGG
TACGCCGGCGAGGACCTCGCGACGGTAGCGGTTGCCTGCGGATTGACTGGCGAAGGGGTGATCGAACTGCAC
AGCGCGGCCGAATACCGGGTCGGCGCGATCGGTTTCGCTCCGGGATTCGCCTACCTCGGCGGCCTCGATCCG
CGCCTGGTCCTGCCGCGGCGGGCCACCCCGCGGGCGCGTGTACCGGCCGGCAGCCTGGCCATTGCCGAGGCG
CAGACGGCGATCTATCCGCAGGCCTCGCCCGGCGGCTGGCACCTGCTGGGACGCAGCCCGTGGCGTCCGTTC
GATCCGGCCGCGATTCCTCCGTGCCCACTGGCGCTGGGCGACCGGGTGCGCTTCGTCGCCATCGGGCGCGAG
GCTTTCCTCGACCTGGGCGGGCGCGAATGA
Translation:
MIRIEPAGAEALLLTLAEEPEVDLSVRLAELARRLREGLGEGVRDLVPGWTTLMLHYDPYRIAPQVLEERLG
PLLAEWHAWRPAEDAGRLHEIPVWYAGEDLATVAVACGLTGEGVIELHSAAEYRVGAIGFAPGFAYLGGLDP
RLVLPRRATPRARVPAGSLAIAEAQTAIYPQASPGGWHLLGRSPWRPFDPAAIPPCPLALGDRVRFVAIGRE
AFLDLGGRE*
AnnotationID:3488GeneID:3480
AnnotatorUID: diggins
Modification Date/Time: 2005-05-20 08:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative allophanate hydrolase subunit 1
Cell Localization:()
Synonyms:PA4510
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2049,pfam02682
Secondary Functional Category(ies):
EC Number:3.5.1.54
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2049, DUR1, Allophanate hydrolase subunit 1 
[Amino acid transport and metabolism]
CD-Length = 223 residues, 100.0% aligned
Score =  258 bits (661), Expect = 7e-70
Identities = 118/225 (52%), Positives = 139/225 (61%), Gaps = 5/225 (2%)

pfam02682, AHS1, Allophanate hydrolase subunit 1. 
CD-Length = 201 residues,  98.0% aligned
Score =  165 bits (420), Expect = 6e-42
Identities = 89/200 (44%), Positives = 109/200 (54%), Gaps = 6/200 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14857




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31554




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3480_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3480
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5543
                           PA4510_tr
                           translation of PA4510
                           225
                           98.66
                           99.11
                           0
                           1168.0
     

     
     
154373
                           gb|AAG07898.1|AE004864_10
                           (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           225
                           98.22
                           99.11
                           0
                           1165.0
     

     
     
154375
                           gb|AAQ60837.1|
                           (AE016921) probable carboxylase [Chromobacterium violaceum ATCC 12472]
                           235
                           43.82
                           53.19
                           25
                           423.0
     

     
     
5544
                           PA2111_tr
                           translation of PA2111
                           243
                           43.62
                           55.14
                           24
                           435.0
     

     
     
154374
                           gb|AAG05499.1|AE004638_9
                           (AE004638) hypothetical protein PA2111 [Pseudomonas aeruginosa PAO1]
                           243
                           43.62
                           55.14
                           24
                           435.0
     

     






      

          
GC ORFID: 46482How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4510Glimmer Score: 

          
Start: 4476154Stop: 4475477

          
Length: 678


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4510 translation of PA4510Homolog Bit Score 454.0

          
Other Homologs:  t_PA2111 (ORF: BLASTX 174.0), t_PA4510 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCCGCATCGAACCCGCTGGTGCCGAAGCCCTGCTGCTGACGCTCGCCGAAGAGCCCGAAGTGGACCTG 
TCTGTGCGCCTGGCCGAGCTGGCCAGACGTCTGCGCGAGGGGCTTGGCGAAGGCGTCAGGGATCTGGTGCCG 
GGCTGGACCACCCTGATGCTGCATTACGACCCCTACCGCATCGCCCCGCAGGTACTGGAAGAACGCCTGGGT 
CCGCTGCTGGCGGAGTGGCACGCCTGGCGCCCCGCCGAGGATGCCGGGCGCCTGCACGAGATTCCCGTCTGG 
TACGCCGGCGAGGACCTCGCGACGGTAGCGGTTGCCTGCGGATTGACTGGCGAAGGGGTGATCGAACTGCAC 
AGCGCGGCCGAATACCGGGTCGGCGCGATCGGTTTCGCTCCGGGATTCGCCTACCTCGGCGGCCTCGATCCG 
CGCCTGGTCCTGCCGCGGCGGGCCACCCCGCGGGCGCGTGTACCGGCCGGCAGCCTGGCCATTGCCGAGGCG 
CAGACGGCGATCTATCCGCAGGCCTCGCCCGGCGGCTGGCACCTGCTGGGACGCAGCCCGTGGCGTCCGTTC 
GATCCGGCCGCGATTCCTCCGTGCCCACTGGCGCTGGGCGACCGGGTGCGCTTCGTCGCCATCGGGCGCGAG 
GCTTTCCTCGACCTGGGCGGGCGCGAATGA