ViewGene
Locus Name:
GeneID:
Location:

GeneID:348
TrivialName: PA14_12990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12990
PAO1 Ortholog Locus:PA3933
Sequence Length:1962
Protein Length:653
Start: 1115342
Stop: 1113381
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07320.1|AE004811_3 (AE004811) probable choline transporter [Pseudomonas aeruginosa PAO1]
Identities = 653/653 (100%), Positives = 653/653 (100%)
Sequence:
ATGAATCCCCCGGTGTTCTACGGTGCGGCGATCCTGATCCTGCTGTTCGCCGCGGTGGTCATCGGCTTCCCC
CAGCGCGCCGGCGAATGGCTGCTGGCCGCACAGACCTGGGCCTCGCAGACCGTCGGTTGGTACTACCTGCTG
GCGATGACGCTGTACCTGATCTTCGTGGTGGTCACCGCGCTTTCCGGCTACGGCAAGATCAAGCTCGGTGCC
GACCACGACGAGCCGGAATTCAGCTACCTGTCCTGGGCCGGCATGCTGTTCGCCGCCGGCATCAGCATCACC
CTGTTCTTCTTCTGCGTATCCGAGCCGTTGACCCACTTCCTCCAGCCGCCGCAAGGCGAGGCCGGAACCCAG
GAAGCCGCGCGGCAGGCCATGGAACTGCTGTTCCTGCACTGGGGCCTGCACGGCTGGGGCGTGTTCGCCCTG
GTGGCGATGGCCCTGGCCTACTTCGCCTACCGCCACAACCTGCCACTGGCCCTGCGCTCGGCGCTCTACCCG
TTGATCGGCAAGCGCATCAACGGGCCGATCGGCTACACGGTGGACTGCTTCGGCATCATCGCCACGGTGTTC
GGCCTCGGCGCCGACATGGGCTTCGGCGTGCTCCAGCTCAACTCCGGGCTGGACTACCTGTACGCCATCCCG
CATACCCACCCGGTGCAGATGGCGCTCATCGTGCTGATGATGGGCGCGGCGATCTCGGTGGCGGTCTCCGGG
GTCGACAAGGGCATCCGCATCCTCTCCGACATCAACATGCTGCTGGCCTGCAGCCTGCTGCTGTTCGTGCTG
TTCGCCGGTCCGACCCAGCACCTGCTCAACACCCTGGTGCAGAACGTCGGCGACTACCTCGGCCACCTGCCG
GGCAAGAGCTTCGACCTCTACGCCTACGGTGGTCCCAGCGACTGGCTGGGCTCGTGGACGGTGTTCTACTGG
GCCTGGTGGATCGCCTGGGCGCCCTTCGTGGGCCTGTTCATCGCGCGCATCTCGCGCGGCCGGACGATCCGC
GAATTCGTCTTCGGCGTGCTGTTCATCCCGCTCGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGC
GCCCTGGAGCAGGCCCTCGGCGGCGCCAGcgaacTCGGCCGGGTGGCCATCGAGCAGCCGTCGATGGCCCTC
TACCAGATGCTCCAGAACTACCCCTGGAGCCGCGCGGTGATCACCGTCACTGTGCTGGTCAGCTTCGTCTTC
TTCGTCACCTCGGCGGACTCCGGCACCGTGGTCCTCTCCACCCTCTCCGCCCACGGCGGCAGCGCCGACGAC
GACGGACCGAAGTGGCTGCGGGTGTTCTGGGGCTCGGTCACCGCGCTGGTCACCGGCGGGCTGCTGTTCGCC
GGCAGCATCGACGCGCTGAAGTCGGCGGTGGTGCTGACCTCCCTGCCCTTCTCGCTGATCCTGCTATTGATG
ATGTGGGGCCTGCACAAGGCCTTCTACATGGAGTCGCAGCGCCAGCGGGCGCGGAGCCACTCCCTGGCGCCG
CTGATGAGCGGCAACGGCAAGCGCTCCGGCGGCTGGAAGCGACGCCTGTCGCAGGCCGTGCACTTCCCCTCG
CGGGACGAGGTGTACCGCTTCATGAACGACGTTGTGCGCCCGGCGATCAGCGAGGTTTCCGAGGTGTTCCGC
GAGAAGGGCCTGGCGGTGGACGCCCAGCTCGACCCGGGCAACGCCTCGCTGAGCCTGGAGATCGGTCATGGC
GAGCAGCATCGGTTCCTCTACCAGGTGCTGATGCGCGGCTACTTCACGCCGTCCTTCGCGCGTGCCGGCATG
GGCGGCCTGCACCTGAAGAATCGCCGCTACTTCCGTGCCGAGGTGCATCTCGCCGAAGGTAGCCAGGACTAC
GATCTGATGGGCTACACCAAGGAGCAGATCATCAACGACATGCTCGACCAGTACGAGCGGCACCTGCAGTTC
CTGCACCTGGTGCGTTGA
Translation:
MNPPVFYGAAILILLFAAVVIGFPQRAGEWLLAAQTWASQTVGWYYLLAMTLYLIFVVVTALSGYGKIKLGA
DHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHFLQPPQGEAGTQEAARQAMELLFLHWGLHGWGVFAL
VAMALAYFAYRHNLPLALRSALYPLIGKRINGPIGYTVDCFGIIATVFGLGADMGFGVLQLNSGLDYLYAIP
HTHPVQMALIVLMMGAAISVAVSGVDKGIRILSDINMLLACSLLLFVLFAGPTQHLLNTLVQNVGDYLGHLP
GKSFDLYAYGGPSDWLGSWTVFYWAWWIAWAPFVGLFIARISRGRTIREFVFGVLFIPLGFTLAWMSIFGNS
ALEQALGGASELGRVAIEQPSMALYQMLQNYPWSRAVITVTVLVSFVFFVTSADSGTVVLSTLSAHGGSADD
DGPKWLRVFWGSVTALVTGGLLFAGSIDALKSAVVLTSLPFSLILLLMMWGLHKAFYMESQRQRARSHSLAP
LMSGNGKRSGGWKRRLSQAVHFPSRDEVYRFMNDVVRPAISEVSEVFREKGLAVDAQLDPGNASLSLEIGHG
EQHRFLYQVLMRGYFTPSFARAGMGGLHLKNRRYFRAEVHLAEGSQDYDLMGYTKEQIINDMLDQYERHLQF
LHLVR*
AnnotationID:357GeneID:348
AnnotatorUID: urbach
Modification Date/Time: 2004-04-02 18:06:57
Gene Name:
Confidence Code:3
GeneProduct:probable choline transporter
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1292,pfam02028
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:699




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17841




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:348
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
579
                           PA3933_tr
                           translation of PA3933
                           653
                           99.99
                           99.99
                           0
                           3409.0
     

     
     
27803
                           gb|AAG07320.1|AE004811_3
                           (AE004811) probable choline transporter [Pseudomonas aeruginosa PAO1]
                           653
                           99.99
                           99.99
                           0
                           3409.0
     

     
     
27805
                           gb|AAN65861.1|AE016214_6
                           (AE016774) choline/carnitine/betaine transporter family protein [Pseudomonas putida KT2440]
                           654
                           78.28
                           88.07
                           2
                           2740.0
     

     
     
27804
                           gb|AAO58695.1|
                           (AE016875) transporter, BCCT family [Pseudomonas syringae pv. tomato str. DC3000]
                           667
                           77.66
                           86.20
                           17
                           2772.0
     

     
     
27806
                           gb|AAM35609.1|
                           (AE011702) high-affinity choline transport [Xanthomonas axonopodis pv. citri str. 306]
                           667
                           70.46
                           81.25
                           22
                           2449.0
     

     






      

          
GC ORFID: 43350How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3933Glimmer Score: 

          
Start: 3838596Stop: 3840557

          
Length: 1962


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3933 translation of PA3933Homolog Bit Score 1317.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6540 (ORF: BLASTX 1077.0), t_PA5291 (ORF: BLASTX 642.0), t_PA3933 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCCCCGGTGTTCTACGGTGCGGCGATCCTGATCCTGCTGTTCGCCGCGGTGGTCATCGGCTTCCCC 
CAGCGCGCCGGCGAATGGCTGCTGGCCGCACAGACCTGGGCCTCGCAGACCGTCGGTTGGTACTACCTGCTG 
GCGATGACGCTGTACCTGATCTTCGTGGTGGTCACCGCGCTTTCCGGCTACGGCAAGATCAAGCTCGGTGCC 
GACCACGACGAGCCGGAATTCAGCTACCTGTCCTGGGCCGGCATGCTGTTCGCCGCCGGCATCAGCATCACC 
CTGTTCTTCTTCTGCGTATCCGAGCCGTTGACCCACTTCCTCCAGCCGCCGCAAGGCGAGGCCGGAACCCAG 
GAAGCCGCGCGGCAGGCCATGGAACTGCTGTTCCTGCACTGGGGCCTGCACGGCTGGGGCGTGTTCGCCCTG 
GTGGCGATGGCCCTGGCCTACTTCGCCTACCGCCACAACCTGCCACTGGCCCTGCGCTCGGCGCTCTACCCG 
TTGATCGGCAAGCGCATCAACGGGCCGATCGGCTACACGGTGGACTGCTTCGGCATCATCGCCACGGTGTTC 
GGCCTCGGCGCCGACATGGGCTTCGGCGTGCTCCAGCTCAACTCCGGGCTGGACTACCTGTACGCCATCCCG 
CATACCCACCCGGTGCAGATGGCGCTCATCGTGCTGATGATGGGCGCGGCGATCTCGGTGGCGGTCTCCGGG 
GTCGACAAGGGCATCCGCATCCTCTCCGACATCAACATGCTGCTGGCCTGCAGCCTGCTGCTGTTCGTGCTG 
TTCGCCGGTCCGACCCAGCACCTGCTCAACACCCTGGTGCAGAACGTCGGCGACTACCTCGGCCACCTGCCG 
GGCAAGAGCTTCGACCTCTACGCCTACGGTGGTCCCAGCGACTGGCTGGGCTCGTGGACGGTGTTCTACTGG 
GCCTGGTGGATCGCCTGGGCGCCCTTCGTGGGCCTGTTCATCGCGCGCATCTCGCGCGGCCGGACGATCCGC 
GAATTCGTCTTCGGCGTGCTGTTCATCCCGCTCGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGC 
GCCCTGGAGCAGGCCCTCGGCGGCGCCAGcgaacTCGGCCGGGTGGCCATCGAGCAGCCGTCGATGGCCCTC 
TACCAGATGCTCCAGAACTACCCCTGGAGCCGCGCGGTGATCACCGTCACTGTGCTGGTCAGCTTCGTCTTC 
TTCGTCACCTCGGCGGACTCCGGCACCGTGGTCCTCTCCACCCTCTCCGCCCACGGCGGCAGCGCCGACGAC 
GACGGACCGAAGTGGCTGCGGGTGTTCTGGGGCTCGGTCACCGCGCTGGTCACCGGCGGGCTGCTGTTCGCC 
GGCAGCATCGACGCGCTGAAGTCGGCGGTGGTGCTGACCTCCCTGCCCTTCTCGCTGATCCTGCTATTGATG 
ATGTGGGGCCTGCACAAGGCCTTCTACATGGAGTCGCAGCGCCAGCGGGCGCGGAGCCACTCCCTGGCGCCG 
CTGATGAGCGGCAACGGCAAGCGCTCCGGCGGCTGGAAGCGACGCCTGTCGCAGGCCGTGCACTTCCCCTCG 
CGGGACGAGGTGTACCGCTTCATGAACGACGTTGTGCGCCCGGCGATCAGCGAGGTTTCCGAGGTGTTCCGC 
GAGAAGGGCCTGGCGGTGGACGCCCAGCTCGACCCGGGCAACGCCTCGCTGAGCCTGGAGATCGGTCATGGC 
GAGCAGCATCGGTTCCTCTACCAGGTGCTGATGCGCGGCTACTTCACGCCGTCCTTCGCGCGTGCCGGCATG 
GGCGGCCTGCACCTGAAGAATCGCCGCTACTTCCGTGCCGAGGTGCATCTCGCCGAAGGTAGCCAGGACTAC 
GATCTGATGGGCTACACCAAGGAGCAGATCATCAACGACATGCTCGACCAGTACGAGCGGCACCTGCAGTTC 
CTGCACCTGGTGCGTTGA