ViewGene
Locus Name:
GeneID:
Location:

GeneID:3479
TrivialName: PA14_16460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16460
PAO1 Ortholog Locus:PA3705
Sequence Length:690
Protein Length:229
Start: 1409051
Stop: 1409740
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07092.1|AE004789_12 (AE004789) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
ATGGTTGAGGCGAGCCTGACCTTGCTCGATACCCAACAGGTGGATGACTGCTGGAACCGCATCGGCGTGCAT
GGCGACAAGTCCTGCGAACGCCTGGCCGAGCATGTCCATTGCCGCAACTGCGAGGTTTACGCTGCCGCGGCG
ACCTACTTGCTGGACCGCATCGCCCTGCGCCAGGACCAGCTCGACAGCGCCGAAACGATGGACAGCCAGCGC
GAACAGAGCGACCTCGGCGAGACGCGTTCGATCCTGGTGTTCCGCCTGGGCGAAGAGTGGTTCGGCCTGGCC
ACCGGCAGCCTGGTGGAAGTGGCGCCGATGAATCCTATCCATTCCCTGCCGCACCAGCGCTCGCGCGCCCTG
CAAGGGGTGACCAACGTGCGCGGCGCGCTGGTCGCCTGCCTTTCCCTCGGCGAACTGCTGGATCTCGAACCC
GGCGCCGCGCCGGTCAGCGAGCGCCGGGTGGTTCCGCGCATGCTGATCATTTCCGCCGCCGGCGGTCCGGTG
GTGGCGCCGGTGGAGGAAGTCGACGGCATCCATGCGATTCCGCTGGCGCGGATACTGCCGCCCAACCACGCC
GACGGCCAGGCCTCGCGCCGGCACGTGGCCGGCGTGCTGCAATGGCGTGAGCGGAGCATCACCCTGCTCGAC
GAAGGCCCTCTCCTGCAAGCCGTAGCGCGGAGCCTGGCATGA
Translation:
MVEASLTLLDTQQVDDCWNRIGVHGDKSCERLAEHVHCRNCEVYAAAATYLLDRIALRQDQLDSAETMDSQR
EQSDLGETRSILVFRLGEEWFGLATGSLVEVAPMNPIHSLPHQRSRALQGVTNVRGALVACLSLGELLDLEP
GAAPVSERRVVPRMLIISAAGGPVVAPVEEVDGIHAIPLARILPPNHADGQASRRHVAGVLQWRERSITLLD
EGPLLQAVARSLA*
AnnotationID:3487GeneID:3479
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 14:02:47
Gene Name:wspD
Confidence Code:3
GeneProduct:CheW domain protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0835,cd00732
Secondary Functional Category(ies):Chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO92336.1| (AY074937) WspD [Pseudomonas fluorescens]
          Length = 232

 Score =  261 bits (667), Expect = 2e-69
 Identities = 137/225 (60%), Positives = 165/225 (73%), Gaps = 7/225 (3%)

>gb|AAO55017.1| (AE016861) CheW domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 229

 Score =  244 bits (623), Expect = 3e-64
 Identities = 128/225 (56%), Positives = 154/225 (68%), Gaps = 4/225 (1%)

>gb|AAL27612.1|AF430345_5 (AF430345) putative chemotaxis sensor/effector fusion protein
           CheA3/Y3 [Pseudomonas putida]
          Length = 498

 Score =  221 bits (562), Expect = 3e-57
 Identities = 118/208 (56%), Positives = 140/208 (67%), Gaps = 13/208 (6%)








 
Structural Features:
COG0835, CheW, Chemotaxis signal transduction protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 165 residues,  95.2% aligned
Score =  103 bits (259), Expect = 2e-23
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 6/163 (3%)

cd00732, CheW, CheW, a small regulator protein, unique to 
the chemotaxis signalling in prokaryotes and archea.
CD-Length = 140 residues,  92.9% aligned
Score = 70.2 bits (172), Expect = 2e-13
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 6/136 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6961




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3479
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5542
                           PA3705_tr
                           translation of PA3705
                           229
                           99.99
                           99.99
                           0
                           1169.0
     

     
     
154368
                           gb|AAG07092.1|AE004789_12
                           (AE004789) hypothetical protein PA3705 [Pseudomonas aeruginosa PAO1]
                           229
                           99.99
                           99.99
                           0
                           1169.0
     

     
     
154369
                           gb|AAO92336.1|
                           (AY074937) WspD [Pseudomonas fluorescens]
                           239
                           58.99
                           69.45
                           17
                           671.0
     

     
     
154370
                           gb|AAO55017.1|
                           (AE016861) CheW domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           233
                           54.93
                           66.09
                           8
                           619.0
     

     
     
154371
                           gb|AAN67113.1|AE016340_4
                           (AE016779) CheW domain protein [Pseudomonas putida KT2440]
                           231
                           53.67
                           64.93
                           18
                           599.0
     

     






      

          
GC ORFID: 46481How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3705Glimmer Score: 

          
Start: 3544886Stop: 3544197

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3705 translation of PA3705Homolog Bit Score 454.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4584 (ORF: BLASTX 248.0), t_PA3705 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTGAGGCGAGCCTGACCTTGCTCGATACCCAACAGGTGGATGACTGCTGGAACCGCATCGGCGTGCAT 
GGCGACAAGTCCTGCGAACGCCTGGCCGAGCATGTCCATTGCCGCAACTGCGAGGTTTACGCTGCCGCGGCG 
ACCTACTTGCTGGACCGCATCGCCCTGCGCCAGGACCAGCTCGACAGCGCCGAAACGATGGACAGCCAGCGC 
GAACAGAGCGACCTCGGCGAGACGCGTTCGATCCTGGTGTTCCGCCTGGGCGAAGAGTGGTTCGGCCTGGCC 
ACCGGCAGCCTGGTGGAAGTGGCGCCGATGAATCCTATCCATTCCCTGCCGCACCAGCGCTCGCGCGCCCTG 
CAAGGGGTGACCAACGTGCGCGGCGCGCTGGTCGCCTGCCTTTCCCTCGGCGAACTGCTGGATCTCGAACCC 
GGCGCCGCGCCGGTCAGCGAGCGCCGGGTGGTTCCGCGCATGCTGATCATTTCCGCCGCCGGCGGTCCGGTG 
GTGGCGCCGGTGGAGGAAGTCGACGGCATCCATGCGATTCCGCTGGCGCGGATACTGCCGCCCAACCACGCC 
GACGGCCAGGCCTCGCGCCGGCACGTGGCCGGCGTGCTGCAATGGCGTGAGCGGAGCATCACCCTGCTCGAC 
GAAGGCCCTCTCCTGCAAGCCGTAGCGCGGAGCCTGGCATGA