ViewGene
Locus Name:
GeneID:
Location:

GeneID:3478
TrivialName: PA14_19690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19690
PAO1 Ortholog Locus:PA3431
Sequence Length:687
Protein Length:228
Start: 1698901
Stop: 1699587
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06819.1|AE004764_5 (AE004764) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGAGTCTCGATAAGCAAGCCCTGTTCTGGTTGGCGGCGACCGTCGGCGGCTACCTGCTGAGCCGCCAGCTG
TACCGCCGGGTGAAGTGGTACTGGCTGTCGCCCATCGTGTTCGTCCCGGTGCTGCTCTACGCCCTGGCGATT
CCCACCCATACCCGCTACGCCGACTACGCCCGCGACACCAATTGGCTGGTGGCGCTGCTCGGTCCGGCGACG
GTGGCCTTCGCCATCCCGATCTGGCAGCAGCGCGAGCTGCTGATGCGCCACTGGCCGGCGCTGCTGGCCGGG
ATGTTCGCCGGCACCGCAGTGGCCATCGGCAGCTCCTGGGCGCTGGCCCAGGCCCTGGCGCTGGACGGCCAG
GTCACGCTGTCGTTGCTGCCGCGCTCGATCACCACGCCGTTCGCCATGGAGATGTCCCACGACCTGGGTGGC
GTGCCAGAACTGACCGCCGCCTTCGTGATGATCACCGGGGTGTTCGGCGCGGTGATCGGCGGCACCCTGCTG
CGCGTCCTGCGCTTGCGCACGCCGCTGGCCCGCGGCGCGCTGTTCGGCGTCGGCGCGCACGGCGCCGGCACC
AGTCGGGCCTACGAGTTCGGCGGCGAGGAAGGTTCGGCGGCCGGTCTGCTGATGGTTCTCACCGGGCTGTTC
AACCTGCTGGTCGCACCCCTGGTCGCCCACTGCCTGTAG
Translation:
MSLDKQALFWLAATVGGYLLSRQLYRRVKWYWLSPIVFVPVLLYALAIPTHTRYADYARDTNWLVALLGPAT
VAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRSITTPFAMEMSHDLGG
VPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHGAGTSRAYEFGGEEGSAAGLLMVLTGLF
NLLVAPLVAHCL*
AnnotationID:3486GeneID:3478
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative murein hydrolase export regulator
Cell Localization:()
Synonyms:PA3431
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04172,COG1346
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL52777.1| (AE009595) murein hydrolase export regulator [Brucella melitensis
           16M]
          Length = 235

 Score =  257 bits (657), Expect = 3e-68
 Identities = 125/221 (56%), Positives = 166/221 (75%)

>gb|AAN29275.1|AE014344_10 (AE014344) membrane protein, putative [Brucella suis 1330]
          Length = 235

 Score =  254 bits (649), Expect = 3e-67
 Identities = 124/221 (56%), Positives = 165/221 (74%)

>gb|AAG57280.1|AE005446_8 (AE005446) putative seritonin transporter [Escherichia coli O157:H7
           EDL933]
          Length = 231

 Score =  139 bits (351), Expect = 1e-32
 Identities = 72/218 (33%), Positives = 124/218 (56%), Gaps = 1/218 (0%)








 
Structural Features:
pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon 
are potential membrane proteins
CD-Length = 215 residues, 100.0% aligned
Score =  231 bits (591), Expect = 5e-62
Identities = 101/215 (46%), Positives = 146/215 (67%)

COG1346, LrgB, Putative effector of murein hydrolase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 230 residues,  99.1% aligned
Score =  246 bits (629), Expect = 2e-66
Identities = 105/228 (46%), Positives = 152/228 (66%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3478_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3478
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5541
                           PA3431_tr
                           translation of PA3431
                           228
                           99.99
                           99.99
                           0
                           1169.0
     

     
     
154357
                           gb|AAG06819.1|AE004764_5
                           (AE004764) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           228
                           99.99
                           99.99
                           0
                           1169.0
     

     
     
154358
                           gb|AAN70198.1|AE016659_4
                           (AE016791) LrgB family protein [Pseudomonas putida KT2440]
                           228
                           68.42
                           79.38
                           0
                           802.0
     

     
     
154359
                           gb|AAL52777.1|
                           (AE009595) murein hydrolase export regulator [Brucella melitensis 16M]
                           239
                           52.30
                           70.29
                           15
                           647.0
     

     
     
154360
                           gb|AAN29275.1|AE014344_10
                           (AE014344) membrane protein, putative [Brucella suis 1330]
                           239
                           51.88
                           69.87
                           15
                           639.0
     

     






      

          
GC ORFID: 46480How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3431Glimmer Score: 

          
Start: 3255031Stop: 3254345

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3431 translation of PA3431Homolog Bit Score 454.0

          
Other Homologs:  t_PA3431 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTCGATAAGCAAGCCCTGTTCTGGTTGGCGGCGACCGTCGGCGGCTACCTGCTGAGCCGCCAGCTG 
TACCGCCGGGTGAAGTGGTACTGGCTGTCGCCCATCGTGTTCGTCCCGGTGCTGCTCTACGCCCTGGCGATT 
CCCACCCATACCCGCTACGCCGACTACGCCCGCGACACCAATTGGCTGGTGGCGCTGCTCGGTCCGGCGACG 
GTGGCCTTCGCCATCCCGATCTGGCAGCAGCGCGAGCTGCTGATGCGCCACTGGCCGGCGCTGCTGGCCGGG 
ATGTTCGCCGGCACCGCAGTGGCCATCGGCAGCTCCTGGGCGCTGGCCCAGGCCCTGGCGCTGGACGGCCAG 
GTCACGCTGTCGTTGCTGCCGCGCTCGATCACCACGCCGTTCGCCATGGAGATGTCCCACGACCTGGGTGGC 
GTGCCAGAACTGACCGCCGCCTTCGTGATGATCACCGGGGTGTTCGGCGCGGTGATCGGCGGCACCCTGCTG 
CGCGTCCTGCGCTTGCGCACGCCGCTGGCCCGCGGCGCGCTGTTCGGCGTCGGCGCGCACGGCGCCGGCACC 
AGTCGGGCCTACGAGTTCGGCGGCGAGGAAGGTTCGGCGGCCGGTCTGCTGATGGTTCTCACCGGGCTGTTC 
AACCTGCTGGTCGCACCCCTGGTCGCCCACTGCCTGTAG