ViewGene
Locus Name:
GeneID:
Location:

GeneID:3477
TrivialName: PA14_51460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51460
PAO1 Ortholog Locus:PA0993
Sequence Length:714
Protein Length:237
Start: 4575957
Stop: 4575244
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04382.1|AE004532_6 (AE004532) chaperone CupC2 [Pseudomonas aeruginosa PAO1]
Identities = 232/237 (97%), Positives = 233/237 (98%)
Sequence:
ATGAAATATCCATTTTCTTCCAGAGTTATCTGGGGTGGCATCCTTTTGCTTTTTTCCACCCTTGCCAATGCG
GGAATCACACTGGGAGGAACCCGGGTCGTTCTGCAGGCGCCTGCCAAGGAGGCTGCAATCCTGGTCAGGAAC
CAGGCTTCCAAGGACGTGATGATTCAATCCTGGGTAGAGGCTGATAATGGGGCAGATAATCGCGAGGTCCCG
TTTGCCATCACGCCTGCCCTAAGTCGTTTGGGAGGCAACAAGCAGCAAACCCTGCGTATCCTGTTTCAAGGG
GAAGGCTTGCCGAGCGACAGGGAATCCGTATTCCGCCTGAACGTCCAGGAAATTCCGCAAAAATCTGCGTCG
GCTAATACGTTGCAGATAGCTTTGCGCCAGCGTATCAAGGTCTTCTACCGCCCCGATAACTTGTCGGGAACT
TCCGCCGAAGCGCCTGGAAAGTTGATCTGGCGTCTTGTTCGGCAGGGAGGTAAGTCGGTTGTCGAAGTTTCC
AACGATACTGCGTTTCATGTCTCTTTCGCCAACGTGAAATTAAAAGCTGGCAATGCCTCCTATGTCGTTGAT
GCCGACATGGTCGCGCCGAAGTCGAGTCGCCGATTCGAAATCAAGGGAACTCCCCCCGGCGTTTCTGGAAAT
ATCGAGTTCCAGAGCGTAAATGACTATGGCGGCCTCGATAAACATTCCAGCTCCTTATCCGACTGA
Translation:
MKYPFSSRVIWGGILLLFSTLANAGITLGGTRVVLQAPAKEAAILVRNQASKDVMIQSWVEADNGADNREVP
FAITPALSRLGGNKQQTLRILFQGEGLPSDRESVFRLNVQEIPQKSASANTLQIALRQRIKVFYRPDNLSGT
SAEAPGKLIWRLVRQGGKSVVEVSNDTAFHVSFANVKLKAGNASYVVDADMVAPKSSRRFEIKGTPPGVSGN
IEFQSVNDYGGLDKHSSSLSD*
AnnotationID:3485GeneID:3477
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 16:04:35
Gene Name:cupC2
Confidence Code:2
GeneProduct:chaperone CupC
Cell Localization:(8) Periplasmic
Synonyms:PA0993
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:probable pili assembly chaperone 
Functional Category Confidence Code:5
COGs:COG3121
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3121, FimC, P pilus assembly protein, chaperone PapD 
[Cell motility and secretion / Intracellular trafficking and secretion]
        CD-Length = 235 residues,  96.2% aligned
        Score =  212 bits (540), Expect = 4e-56






   
Genomic Context:
Part of probable fimbrial gene cluster of "chaperone-usher pathway"; 
Between genes probably encoding fimbrial usher protein and for fimbrial subunit 






   
Comment:


















    ReferenceID:6957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32096




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.






  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.





  
PubMed:
        11381121  


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3477
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5540
                           PA0993_tr
                           translation of PA0993
                           237
                           97.89
                           98.31
                           0
                           1169.0
     

     
     
154352
                           gb|AAG04382.1|AE004532_6
                           (AE004532) chaperone CupC2 [Pseudomonas aeruginosa PAO1]
                           237
                           97.89
                           98.31
                           0
                           1169.0
     

     
     
154353
                           gb|AAO49832.1|
                           (AY144490) pilin chaperone ecpD1 [Salmonella enterica subsp. enterica serovar Dublin]
                           255
                           38.82
                           57.64
                           24
                           459.0
     

     
     
154354
                           gb|AAN80393.1|AE016760_252
                           (AE016760) Chaperone protein fimC precursor [Escherichia coli CFT073]
                           252
                           37.30
                           53.57
                           31
                           359.0
     

     
     
154356
                           dbj|BAB35535.1|
                           (AP002557) putative fimbrial chaperone protein precursor [Escherichia coli O157:H7]
                           252
                           37.30
                           53.17
                           31
                           355.0
     

     






      

          
GC ORFID: 46479How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0993Glimmer Score: 

          
Start: 377950Stop: 378663

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0993 translation of PA0993Homolog Bit Score 454.0

          
Other Homologs:  t_PA0993 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATATCCATTTTCTTCCAGAGTTATCTGGGGTGGCATCCTTTTGCTTTTTTCCACCCTTGCCAATGCG 
GGAATCACACTGGGAGGAACCCGGGTCGTTCTGCAGGCGCCTGCCAAGGAGGCTGCAATCCTGGTCAGGAAC 
CAGGCTTCCAAGGACGTGATGATTCAATCCTGGGTAGAGGCTGATAATGGGGCAGATAATCGCGAGGTCCCG 
TTTGCCATCACGCCTGCCCTAAGTCGTTTGGGAGGCAACAAGCAGCAAACCCTGCGTATCCTGTTTCAAGGG 
GAAGGCTTGCCGAGCGACAGGGAATCCGTATTCCGCCTGAACGTCCAGGAAATTCCGCAAAAATCTGCGTCG 
GCTAATACGTTGCAGATAGCTTTGCGCCAGCGTATCAAGGTCTTCTACCGCCCCGATAACTTGTCGGGAACT 
TCCGCCGAAGCGCCTGGAAAGTTGATCTGGCGTCTTGTTCGGCAGGGAGGTAAGTCGGTTGTCGAAGTTTCC 
AACGATACTGCGTTTCATGTCTCTTTCGCCAACGTGAAATTAAAAGCTGGCAATGCCTCCTATGTCGTTGAT 
GCCGACATGGTCGCGCCGAAGTCGAGTCGCCGATTCGAAATCAAGGGAACTCCCCCCGGCGTTTCTGGAAAT 
ATCGAGTTCCAGAGCGTAAATGACTATGGCGGCCTCGATAAACATTCCAGCTCCTTATCCGACTGA