ViewGene
Locus Name:
GeneID:
Location:

GeneID:3474
TrivialName: PA14_07250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07250
PAO1 Ortholog Locus:PA0557
Sequence Length:657
Protein Length:218
Start: 625583
Stop: 624927
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03946.1|AE004492_5 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 213/218 (97%), Positives = 215/218 (98%)
Sequence:
ATGAGGGACCTCCTAGGCGGCAGGAAAAGCCCGAGGTATAGCACAGCGGCTTTCCCTCGAATTCCCGACGAA
AGGTTCAAAGCCTTGCGCGGCGTGGCTCGCAGCCATTGGTCAGTGGCTTCGTGGACCTCTCGGGGAAGAGGC
TATTGTCGATCCGAAGGCCCACCCGACGACCAGGGTAAAAGCATTCCGGCACACGCCGGCATCCCCCGCCAC
AACCAGGAGTCAGCCATGAGCAGCGAAGTCAGCGCCATCCGCCAATTGATCGAAGACTGGCGAGCCGCCGTC
CGCGCCAGCGACGTTCCGCGCATCGTCTCGTACTACGCGGAGGACATCGTCGCCTTCGACGCCATCCTGCAA
TTGCAATTCAAGGGGCGCGACGCCTACCAGAAGCACTGGCAGGCCTGCACCGAGATGTGCAAAGGACCGATG
ACCTTCGATATCGCCGAACTGCAGATCCATGCCGACCCGCAGGTCGCCTTCGCCCACTACCTCTGCCACTGC
GGCGGCACCGGCCCGGACGGCCAGCCGCACTCCTCGTGGATGCGGGTCAGCGCCGGCTACCGCAAGCAAGGC
GACGGCTGGAAGGTGATCCACGAGCATTTCTCGGCGCCGTTCGACATGGACGGCAAGGCGCTGTTCGACCTG
CAGCCCTGA
Translation:
MRDLLGGRKSPRYSTAAFPRIPDERFKALRGVARSHWSVASWTSRGRGYCRSEGPPDDQGKSIPAHAGIPRH
NQESAMSSEVSAIRQLIEDWRAAVRASDVPRIVSYYAEDIVAFDAILQLQFKGRDAYQKHWQACTEMCKGPM
TFDIAELQIHADPQVAFAHYLCHCGGTGPDGQPHSSWMRVSAGYRKQGDGWKVIHEHFSAPFDMDGKALFDL
QP*
AnnotationID:3482GeneID:3474
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative isomerase
Cell Localization:()
Synonyms:PA0557
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4319
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4319, Ketosteroid isomerase homolog
CD-Length = 137 residues, 100.0% aligned
Score =  153 bits (388), Expect = 1e-38
Identities = 54/140 (38%), Positives = 70/140 (50%), Gaps = 4/140 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24093




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33843




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3474_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3474
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5536
                           PA0557_tr
                           translation of PA0557
                           218
                           97.70
                           98.62
                           0
                           1168.0
     

     
     
154288
                           gb|AAG03946.1|AE004492_5
                           (AE004492) hypothetical protein PA0557 [Pseudomonas aeruginosa PAO1]
                           218
                           97.70
                           98.62
                           0
                           1168.0
     

     
     
154289
                           gb|AAN70129.1|AE016652_10
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           221
                           36.19
                           45.70
                           83
                           404.0
     

     






      

          
GC ORFID: 46476How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0557Glimmer Score: 

          
Start: 6426925Stop: 6426269

          
Length: 657


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0557 translation of PA0557Homolog Bit Score 454.0

          
Other Homologs:  t_PA0557 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGGACCTCCTAGGCGGCAGGAAAAGCCCGAGGTATAGCACAGCGGCTTTCCCTCGAATTCCCGACGAA 
AGGTTCAAAGCCTTGCGCGGCGTGGCTCGCAGCCATTGGTCAGTGGCTTCGTGGACCTCTCGGGGAAGAGGC 
TATTGTCGATCCGAAGGCCCACCCGACGACCAGGGTAAAAGCATTCCGGCACACGCCGGCATCCCCCGCCAC 
AACCAGGAGTCAGCCATGAGCAGCGAAGTCAGCGCCATCCGCCAATTGATCGAAGACTGGCGAGCCGCCGTC 
CGCGCCAGCGACGTTCCGCGCATCGTCTCGTACTACGCGGAGGACATCGTCGCCTTCGACGCCATCCTGCAA 
TTGCAATTCAAGGGGCGCGACGCCTACCAGAAGCACTGGCAGGCCTGCACCGAGATGTGCAAAGGACCGATG 
ACCTTCGATATCGCCGAACTGCAGATCCATGCCGACCCGCAGGTCGCCTTCGCCCACTACCTCTGCCACTGC 
GGCGGCACCGGCCCGGACGGCCAGCCGCACTCCTCGTGGATGCGGGTCAGCGCCGGCTACCGCAAGCAAGGC 
GACGGCTGGAAGGTGATCCACGAGCATTTCTCGGCGCCGTTCGACATGGACGGCAAGGCGCTGTTCGACCTG 
CAGCCCTGA