ViewGene
Locus Name:
GeneID:
Location:

GeneID:3472
TrivialName: PA14_68090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68090
PAO1 Ortholog Locus:PA5155
Sequence Length:693
Protein Length:230
Start: 6074991
Stop: 6075683
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08540.1|AE004928_6 (AE004928) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 230/230 (100%), Positives = 230/230 (100%)
Sequence:
ATGAGCGAGTGGGAGCTGATCCTCAAGTGGATGCCGAAGATGCTCCAGGGCGCGGCGCTGACCCTGGAGCTG
CTGGCGATCGCGGTGGTCGCCGGGCTCGCCCTGGCCCTGCCGCTGGGCATCGCCCGCGCCTCGCGGCACTGG
TACGTGCGCGCGGTGCCGTACGCCTACATCTTCTTCTTCCGCGGCACGCCGCTGCTGCTGCAACTGTTCATC
GTCTACTACGGCCTGGCGCAGTTCGAGGAAGTGCGCAAGAGCGCCTTCTGGCCCTACCTGCGCGATCCGTAC
TGGTGCGCGCTGCTGACCATGACCCTGCACACCGCCGCCTATATCGCCGAGATCCTCCGCGGCGCGATCCAC
TCGGTGCCGGTCGGCGAGGTGGAGGCCGCCCGCGCCCTCGGCATGTCGCGGCGCCAGGCGCTCTGGCACATC
ATCCTGCCGCGCGCGGTGCGCATCGGCCTGCCGGCCTACAGCAACGAAGTGATCCTGATGCTCAAGGCCAGC
GCGGTGGTCTACACCGTGACCCTGTTCGACATCATGGGCATGGCCCGGACCATCATCGCCCGCACCTACGAA
TCGATGCTGTTCTTCTGCCTGGCCGGCGCGCTGTACCTGGTGATCACCATCGTGCTGACGCGGATCTTCCGC
CTGATCGAACGCTGGTTGCGGGTCGACGCTACCCAGGGCCGCTGA
Translation:
MSEWELILKWMPKMLQGAALTLELLAIAVVAGLALALPLGIARASRHWYVRAVPYAYIFFFRGTPLLLQLFI
VYYGLAQFEEVRKSAFWPYLRDPYWCALLTMTLHTAAYIAEILRGAIHSVPVGEVEAARALGMSRRQALWHI
ILPRAVRIGLPAYSNEVILMLKASAVVYTVTLFDIMGMARTIIARTYESMLFFCLAGALYLVITIVLTRIFR
LIERWLRVDATQGR*
AnnotationID:3480GeneID:3472
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:27
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, permease protein
Cell Localization:()
Synonyms:PA5155
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4160,COG0765,COG4215
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65911.1|AE016219_4 (AE016775) amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 229

 Score =  344 bits (883), Expect = 2e-94
 Identities = 165/227 (72%), Positives = 198/227 (87%)

>gb|AAO58785.1| (AE016875) amino acid ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 229

 Score =  344 bits (882), Expect = 3e-94
 Identities = 168/227 (74%), Positives = 200/227 (88%)

>gb|AAO90033.1| (AE016961) amino acid ABC transporter, permease protein [Coxiella
           burnetii RSA 493]
          Length = 223

 Score =  202 bits (513), Expect = 2e-51
 Identities = 98/216 (45%), Positives = 149/216 (68%)






 
Structural Features:
COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  97.4% aligned
Score =  265 bits (678), Expect = 4e-72
Identities = 123/222 (55%), Positives = 165/222 (74%), Gaps = 1/222 (0%)

COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  97.3% aligned
Score =  183 bits (465), Expect = 2e-47
Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 8/224 (3%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  95.7% aligned
Score =  144 bits (364), Expect = 1e-35
Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 5/220 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6947




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34922




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3472_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3472
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5531
                           PA5155_tr
                           translation of PA5155
                           230
                           99.99
                           99.99
                           0
                           1170.0
     

     
     
154050
                           gb|AAG08540.1|AE004928_6
                           (AE004928) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           230
                           99.99
                           99.99
                           0
                           1170.0
     

     
     
154052
                           gb|AAO58785.1|
                           (AE016875) amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           230
                           73.04
                           86.95
                           1
                           881.0
     

     
     
154051
                           gb|AAN65911.1|AE016219_4
                           (AE016775) amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           230
                           71.73
                           86.08
                           1
                           882.0
     

     
     
154056
                           gb|AAM22578.1|AF375657_15
                           (AF375657) AotM [Aeromonas hydrophila]
                           240
                           45.83
                           62.50
                           20
                           526.0
     

     






      

          
GC ORFID: 46474How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5155Glimmer Score: 

          
Start: 5338677Stop: 5339369

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5155 translation of PA5155Homolog Bit Score 455.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6953 (ORF: BLASTX 345.0), psyr_15may02_Scaffold8_revised_gene7810 (ORF: BLASTX 201.0), t_PA0890 (ORF: BLASTX 200.0), t_PA2925 (ORF: BLASTX 158.0), psyr_15may02_Scaffold5_revised_gene6101 (ORF: BLASTX 158.0), t_PA5155 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGTGGGAGCTGATCCTCAAGTGGATGCCGAAGATGCTCCAGGGCGCGGCGCTGACCCTGGAGCTG 
CTGGCGATCGCGGTGGTCGCCGGGCTCGCCCTGGCCCTGCCGCTGGGCATCGCCCGCGCCTCGCGGCACTGG 
TACGTGCGCGCGGTGCCGTACGCCTACATCTTCTTCTTCCGCGGCACGCCGCTGCTGCTGCAACTGTTCATC 
GTCTACTACGGCCTGGCGCAGTTCGAGGAAGTGCGCAAGAGCGCCTTCTGGCCCTACCTGCGCGATCCGTAC 
TGGTGCGCGCTGCTGACCATGACCCTGCACACCGCCGCCTATATCGCCGAGATCCTCCGCGGCGCGATCCAC 
TCGGTGCCGGTCGGCGAGGTGGAGGCCGCCCGCGCCCTCGGCATGTCGCGGCGCCAGGCGCTCTGGCACATC 
ATCCTGCCGCGCGCGGTGCGCATCGGCCTGCCGGCCTACAGCAACGAAGTGATCCTGATGCTCAAGGCCAGC 
GCGGTGGTCTACACCGTGACCCTGTTCGACATCATGGGCATGGCCCGGACCATCATCGCCCGCACCTACGAA 
TCGATGCTGTTCTTCTGCCTGGCCGGCGCGCTGTACCTGGTGATCACCATCGTGCTGACGCGGATCTTCCGC 
CTGATCGAACGCTGGTTGCGGGTCGACGCTACCCAGGGCCGCTGA