ViewGene
Locus Name:
GeneID:
Location:

GeneID:3471
TrivialName: PA14_18890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18890
PAO1 Ortholog Locus:PA3494
Sequence Length:717
Protein Length:238
Start: 1629215
Stop: 1628499
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06882.1|AE004770_7 (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/240 (98%), Positives = 237/240 (98%), Gaps = 2/240 (0%)
Sequence:
ATGAGTGAACAAGATTTCCGCGAGATCGCCCGCAACGGCCTGTGGCGCAACAACCCGGGTCTGGTCCAGTTG
CTCGGCCTGTGCCCGCTGCTGGGCACCAGCAACTCGACGGTCAACGCCCTCGGCCTGGGCCTGGCCACCATG
CTCGTGCTGGCCTGCTCCAATGCCGCGGTATCGTTGGTGCGCGGCGCGGTGAGCGAGGCGATCCGGCTGCCG
GCGTTCGTCATGATCATCGCCGCGCTGACCACCTGCATCGAACTGCTGATGCAGGCCTGGACCTACGAGCTG
TACCAGGTCCTCGGCATCTTCATCCCGCTGATCACCACCAACTGCGTGATCCTCGGCCGCGCCGAGGCCTTC
GCGGCGAAGAACGGCGTGCTGCGCGCCAGCTTCGACGGACTGCTGATGGGCCTCGGCTTCGCCCTGGTCCTG
CTGGTCCTCGGCGGCCTGCGCGAGCTGCTCGGCCAGGGTACCCTGCTGGCCGACATGCACTTGCTGTTCGGC
CCGGCGGCGGCGGACTGGAAGATCCAGCCGTTCCCGCAGTACCAGGGCTTCCTGCTGGCGATCCTGCCGCCG
GGCGCGTTCATCATGCTCGGCCTGCTGATCGCCCTGAAGAACCGTATCGATGAAAGCCTGGCGGAACGCGCC
AAGGTGCAGGCGGGCGACGTACCCGCCACCCAGCGCCAGCGCGTCCGCGTCACTGGAGTGATTGAATGA
Translation:
MSEQDFREIARNGLWRNNPGLVQLLGLCPLLGTSNSTVNALGLGLATMLVLACSNAAVSLVRGAVSEAIRLP
AFVMIIAALTTCIELLMQAWTYELYQVLGIFIPLITTNCVILGRAEAFAAKNGVLRASFDGLLMGLGFALVL
LVLGGLRELLGQGTLLADMHLLFGPAAADWKIQPFPQYQGFLLAILPPGAFIMLGLLIALKNRIDESLAERA
KVQAGDVPATQRQRVRVTGVIE*
AnnotationID:3479GeneID:3471
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 13:01:22
Gene Name:
Confidence Code:3
GeneProduct:putative NADH:ubiquinone oxidoreductase, subunit RnfE
Cell Localization:()
Synonyms:rnfE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02508,COG4660,COG1347
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC60370.1| (AP005080) RnfE-related protein [Vibrio parahaemolyticus]
          Length = 230

 Score =  253 bits (646), Expect = 7e-67
 Identities = 136/231 (58%), Positives = 168/231 (72%), Gaps = 4/231 (1%)

>emb|CAA72666.1| (Y11913) RnfE protein [Rhodobacter capsulatus]
          Length = 243

 Score =  220 bits (560), Expect = 6e-57
 Identities = 106/206 (51%), Positives = 147/206 (71%)






 
Structural Features:
pfam02508, Rnf-Nqr, Rnf-Nqr subunit, membrane protein. 
CD-Length = 192 residues,  99.5% aligned
Score =  167 bits (425), Expect = 1e-42
Identities = 89/206 (43%), Positives = 118/206 (57%), Gaps = 21/206 (10%)

COG4660, RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 
[Energy production and conversion]
CD-Length = 212 residues, 100.0% aligned
Score =  296 bits (760), Expect = 1e-81
Identities = 128/214 (59%), Positives = 159/214 (74%), Gaps = 2/214 (0%)

COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrD 
[Energy production and conversion]
CD-Length = 208 residues,  99.0% aligned
Score =  134 bits (338), Expect = 1e-32
Identities = 71/214 (33%), Positives = 116/214 (54%), Gaps = 8/214 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32050




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3471_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3471
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5529
                           PA3494_tr
                           translation of PA3494
                           240
                           98.75
                           98.75
                           2
                           1173.0
     

     
     
154012
                           gb|AAG06882.1|AE004770_7
                           (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           240
                           98.75
                           98.75
                           2
                           1173.0
     

     
     
154013
                           dbj|BAC60370.1|
                           (AP005080) RnfE-related protein [Vibrio parahaemolyticus]
                           238
                           57.14
                           70.58
                           8
                           647.0
     

     
     
154014
                           gb|AAN55544.1|AE015693_6
                           (AE015693) NqrDE/RnfAE family protein [Shewanella oneidensis MR-1]
                           242
                           55.78
                           68.18
                           14
                           639.0
     

     
     
154017
                           gb|AAF94173.1|
                           (AE004183) RnfE-related protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           241
                           55.60
                           67.21
                           14
                           621.0
     

     






      

          
GC ORFID: 46473How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3494Glimmer Score: 

          
Start: 3324719Stop: 3325435

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3494 translation of PA3494Homolog Bit Score 455.0

          
Other Homologs:  t_PA3494 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAACAAGATTTCCGCGAGATCGCCCGCAACGGCCTGTGGCGCAACAACCCGGGTCTGGTCCAGTTG 
CTCGGCCTGTGCCCGCTGCTGGGCACCAGCAACTCGACGGTCAACGCCCTCGGCCTGGGCCTGGCCACCATG 
CTCGTGCTGGCCTGCTCCAATGCCGCGGTATCGTTGGTGCGCGGCGCGGTGAGCGAGGCGATCCGGCTGCCG 
GCGTTCGTCATGATCATCGCCGCGCTGACCACCTGCATCGAACTGCTGATGCAGGCCTGGACCTACGAGCTG 
TACCAGGTCCTCGGCATCTTCATCCCGCTGATCACCACCAACTGCGTGATCCTCGGCCGCGCCGAGGCCTTC 
GCGGCGAAGAACGGCGTGCTGCGCGCCAGCTTCGACGGACTGCTGATGGGCCTCGGCTTCGCCCTGGTCCTG 
CTGGTCCTCGGCGGCCTGCGCGAGCTGCTCGGCCAGGGTACCCTGCTGGCCGACATGCACTTGCTGTTCGGC 
CCGGCGGCGGCGGACTGGAAGATCCAGCCGTTCCCGCAGTACCAGGGCTTCCTGCTGGCGATCCTGCCGCCG 
GGCGCGTTCATCATGCTCGGCCTGCTGATCGCCCTGAAGAACCGTATCGATGAAAGCCTGGCGGAACGCGCC 
AAGGTGCAGGCGGGCGACGTACCCGCCACCCAGCGCCAGCGCGTCCGCGTCACTGGAGTGATTGAATGA