ViewGene

Locus Name:
GeneID:
Location:

GeneID:3470
TrivialName: PA14_48930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48930
PAO1 Ortholog Locus:
Sequence Length:1287
Protein Length:428
Start: 4350664
Stop: 4349378
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04113.1|AE004507_12 (AE004507) probable coat protein A of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 245/426 (57%), Positives = 283/426 (66%), Gaps = 22/426 (5%)
Sequence:
CTGGTGCGCCAGGTCTGCGCCGTGTTGCTGGTGTTGTGTAGCTGGAGTGCCTACGCGGAGCCTTATTACTGG
CAATTAAACGGCCCGACTGCTCCTGACCGGTTTACCAGTCCTAGTGCGGCTTGTGAGGTCGGGCTGGGAATG
TATAAGGCTCAATATCCCACGGTTGAAATGGTGATCAATTCGCGGGAGATGAGGGGCTCGACCAACTATGTG
TGCACGGTGTTTCGTTATTTCAACGGGAATCGTATTGAGCCGAATTTCACTATTTCCGTCATGCGCAAGGGC
ACCGGTTGTGCTGAGGGCTCCACGTATAACGCGCAAACGGGAGTGTGTGAAACGCCGCCGGAAAACAACTGC
ATCAAAGGGCTGACGGATCTGTTCAGTTCACCGCCCTCGAACATCTTCGTGTCGGGCGGCAGAAACTTCGTG
AATAGCTCGCCGCCCACTGCCTGCAAGAATGGTTGCCAGTACCTGCCGACCACCTCGAAGACCACCAGTTGC
TATCGCTATCCCGGCAGCGACAACCAAGGCTTCTGCAACTACGTGTTGATGACGGACGGTAGTGCCTGCGCC
GCTGACTCCGGCAATCCCGGCATGACCGGTCCCTCGTTGAACGACACCCCGCCGACCAATCCCGACGAACCG
CCGTCCGACCCGAATGACCCTGGCTGTCCTCCCGGCTATAGCTGGTCCGGGACGACTTGCGTCAAGACGCCC
ACGGATCCGACTGAGCCGGGGGGCGATGGCGGTGATGGCGGTAACACCGGTGGCGGCGATGGCGGGGGCGAC
AACGGCGGCGGCAATGACAACGGGGGTGGCGACGGCGGCACCGGTGGCTCCGATGGGAGCGGCGGCAATGGG
GAGGGCGGCGGCGATGGAAGCGGGGGAGGCGACGGCAGCGGCGGCGGAACCGGTGGCGGCGATGGCGGCAAC
TGCGACCCGGCGAAACAGGACTGCTCCCCCGGTCCTGCCGGCCCCGGCGGCGAACTCAAGGAACCCAAGCCC
GGCACTTGGGATGACGCCATCGCCACCTGGGAACAGAAGGTCGAGCAGGCCAAGAAAGAACTCAAGGACAAG
GTCCGGGCCAACGTCGATCAGATGAAGGGCGCGTTCGACCTCAACCTGGCGGAAGGCGGCGGCCAGCTTCCC
TGCGAGTCCATGACCATTTGGGGCCGATCCTACTCCCTCTGCGTCGCCGACTACGCCGACCAGCTCTCCAAC
CTGCGTGTGGCGCTGCTGCTGATGGCCGCGCTGATCGCCGCTTTCATACTGCTGAGGGACTGA
Translation:
MVRQVCAVLLVLCSWSAYAEPYYWQLNGPTAPDRFTSPSAACEVGLGMYKAQYPTVEMVINSREMRGSTNYV
CTVFRYFNGNRIEPNFTISVMRKGTGCAEGSTYNAQTGVCETPPENNCIKGLTDLFSSPPSNIFVSGGRNFV
NSSPPTACKNGCQYLPTTSKTTSCYRYPGSDNQGFCNYVLMTDGSACAADSGNPGMTGPSLNDTPPTNPDEP
PSDPNDPGCPPGYSWSGTTCVKTPTDPTEPGGDGGDGGNTGGGDGGGDNGGGNDNGGGDGGTGGSDGSGGNG
EGGGDGSGGGDGSGGGTGGGDGGNCDPAKQDCSPGPAGPGGELKEPKPGTWDDAIATWEQKVEQAKKELKDK
VRANVDQMKGAFDLNLAEGGGQLPCESMTIWGRSYSLCVADYADQLSNLRVALLLMAALIAAFILLRD*
AnnotationID:3478GeneID:3470
AnnotatorUID: diggins
Modification Date/Time: 2005-02-03 20:08:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:14853
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24085
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37580
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3470_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3470

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5528 PA0724_tr translation of PA0724 444 56.98 66.44 40 1205.0
154010 gb|AAG04113.1|AE004507_12 (AE004507) probable coat protein A of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1] 444 56.98 66.44 40 1205.0
154011 emb|CAB72217.1| (AL939114) putative secreted protein [Streptomyces coelicolor A3(2)] 450 21.33 28.44 209 264.0
GC ORFID: 46472How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0724Glimmer Score:
Start: 603244Stop: 604530
Length: 1287
Start Codon: CTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0724 translation of PA0724Homolog Bit Score 455.0
Other Homologs: t_PA0724 (ORF: GLIMMER)
GC ORF Sequence
CTGGTGCGCCAGGTCTGCGCCGTGTTGCTGGTGTTGTGTAGCTGGAGTGCCTACGCGGAGCCTTATTACTGG
CAATTAAACGGCCCGACTGCTCCTGACCGGTTTACCAGTCCTAGTGCGGCTTGTGAGGTCGGGCTGGGAATG
TATAAGGCTCAATATCCCACGGTTGAAATGGTGATCAATTCGCGGGAGATGAGGGGCTCGACCAACTATGTG
TGCACGGTGTTTCGTTATTTCAACGGGAATCGTATTGAGCCGAATTTCACTATTTCCGTCATGCGCAAGGGC
ACCGGTTGTGCTGAGGGCTCCACGTATAACGCGCAAACGGGAGTGTGTGAAACGCCGCCGGAAAACAACTGC
ATCAAAGGGCTGACGGATCTGTTCAGTTCACCGCCCTCGAACATCTTCGTGTCGGGCGGCAGAAACTTCGTG
AATAGCTCGCCGCCCACTGCCTGCAAGAATGGTTGCCAGTACCTGCCGACCACCTCGAAGACCACCAGTTGC
TATCGCTATCCCGGCAGCGACAACCAAGGCTTCTGCAACTACGTGTTGATGACGGACGGTAGTGCCTGCGCC
GCTGACTCCGGCAATCCCGGCATGACCGGTCCCTCGTTGAACGACACCCCGCCGACCAATCCCGACGAACCG
CCGTCCGACCCGAATGACCCTGGCTGTCCTCCCGGCTATAGCTGGTCCGGGACGACTTGCGTCAAGACGCCC
ACGGATCCGACTGAGCCGGGGGGCGATGGCGGTGATGGCGGTAACACCGGTGGCGGCGATGGCGGGGGCGAC
AACGGCGGCGGCAATGACAACGGGGGTGGCGACGGCGGCACCGGTGGCTCCGATGGGAGCGGCGGCAATGGG
GAGGGCGGCGGCGATGGAAGCGGGGGAGGCGACGGCAGCGGCGGCGGAACCGGTGGCGGCGATGGCGGCAAC
TGCGACCCGGCGAAACAGGACTGCTCCCCCGGTCCTGCCGGCCCCGGCGGCGAACTCAAGGAACCCAAGCCC
GGCACTTGGGATGACGCCATCGCCACCTGGGAACAGAAGGTCGAGCAGGCCAAGAAAGAACTCAAGGACAAG
GTCCGGGCCAACGTCGATCAGATGAAGGGCGCGTTCGACCTCAACCTGGCGGAAGGCGGCGGCCAGCTTCCC
TGCGAGTCCATGACCATTTGGGGCCGATCCTACTCCCTCTGCGTCGCCGACTACGCCGACCAGCTCTCCAAC
CTGCGTGTGGCGCTGCTGCTGATGGCCGCGCTGATCGCCGCTTTCATACTGCTGAGGGACTGA