ViewGene

Locus Name:
GeneID:
Location:

GeneID: 347

TrivialName: PA14_02150

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_02150

PAO1 Ortholog Locus: PA0172

Sequence Length: 1992

Protein Length: 663

Start: 195608

Stop: 193617

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03562.1|AE004455_3 (AE004455) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 661/663 (99%), Positives = 661/663 (99%)

Sequence:

ATGGCGGCGAACTGGGGGTTGCGCGGCAAATCGGTGGTGGCGCTGTTGCTGGCCTGTGCCCTGGCACTGGTC
CCGGCGGTGCTGCTGGGCTGGCGCGCGATGGACGACATCCGTACGCACTTCGGCCTGGCCTACGCGAAGAAC
TTCACCCTGCTGCACCGGCAGAAGATCCTCGCCCCGGTCTCCCGCGAACTGGCGTTGTCGCGCCGTTTCGCC
GAATCGGTGGTGACCCGCGACTGGCTGCTGAAGGAAGACGACCCGGCGCGCCGCGCGCTGTTCTTCCGCGAG
GCCGAGGGCTACCGCGGCGACTTCCGCGACCACGCCTACTTCATCATCGCCAGCGGCTCCCAGCACTACTAC
TTCAACGACGGCAGCCAACCCTACAGCGAACGGCCGCGCTACACCCTGGAGGCCGGCGACCCGGAAGACGCC
TGGTACTTCAATACCCTGCGCAACAGCGCCGCCTACAACATCAACGTCAATGTCGACAGCAAGTTGAACCTG
ACCAAGGTCTGGTTCAACCTGGTGATCCGCGACCAGGGCCGGCCCATCGGCCTGGCCGGCAGCGGCCTGGAC
CTGAGCGGCTTCCTCGACGACTTCATCATCGCCCGCGAGCCGGGCGTGACGCCGATGATCGTCGGCGACGAC
GGCGCCATCCAGGCCCACCCGGACCGCCGCCTGATCGCCTACAGCTCCGCCGCCGGCGGCGCCAGCGAACGC
CACCGGGTGTTCGACCTGCTCGACCAGCCGGAACAGCGCGACGCCCTGCGCGAGGCCATGCGCCTGGCCCGC
GCCAAGGCCGGCTCGGTGCACTGCCTGTGGGCCGGCCTCGACGGCCGCCAGCAACTCTTCGCCGTGGCCTAC
ATTCCCCAACTGCGCTGGTACGTGCTCACCGCCGTCGACCTGCACGCCGCCCAGGTCCTCGACAACCGCTGG
CTTTGGCCGCTGGCGGGCACGTTCCTGCTGTTGCTGGTGGCCCTGCTGCTGGGCTTCGCCTATGCCGTCGAG
CGCCTGCTGTTGCGCCCCCTGCGCAGCCTCAAGCGCTCGGCCAAGGCGATCGCCGCCGGGCGCTACGACACG
CCGCTGCCGCTGGCGCGCCAGGACGAGATCGGCTCGCTGTCGAAGGCCTTCGCCAGCATGGCCGACCAAGTC
CGCCGGCACACCGCCGAGCTGGAAGACAAGGTCCAGGAGCGCACCCAGGCGCTGGAGGAAGCCAACCGCGAG
ATGGCCGCCGCGCAGAAGAAGATCGGCGACAGCCTCGACTACGCCAGCCTGATCCAGCGCGCGATCCTCCCC
GACCGCCAGCTCAGCGCCACCCTCGGCGAGCATCACTTCATCCTGTGGAAACCGCGCGACGTGGTCGGCGGC
GACTTCTACGTGTACCGCGAGCAGGCCGACGGCTACCTGATCGGCGTGGTCGACTGCGCCGGTCACGGCGTG
CCCGGCGCGCTGATGACCATGCTCGCCCGCGCCGCCATCGACCACGCCATCGAGGCGGTGGGCAGCCGCGAC
CCGGCGGCGATCCTCGGCGAGACCGACCAGGCGATGCGCAGCATGCTCAGCCAGGAGCAGATCCCCCAGGCG
CTGGCCACCAACATGGATGCCGGGCTGGTCTGGGTCGACCGCCGGCGCCGCCAGCTGGCCTTCGCCGGGGCG
AAGATCTCGCTGTACGCCAGCGACGGCGAGGAGGTCCAGGAACTCAAGGGCGCGCGCCGGGCGATCGGCGAC
AAGCGCCGTGGCGACTACCGCAACATCGAGGTACCGCTGGCGCCGGGCTGGACCTTCTACCTGAGCACCGAC
GGTTTCCTCGACCAGGCCGGCGGCGAACACGGCTTCGGCTTCGGCAGCCGGCGCTTCGCCGACATGCTCCGC
GACCACGCGCGGCAGCCGCTCCCCGAGCAGGCCGAGGCCTTCGTGGCGACGCTCGCCGAGTACCAGGGCGAG
CACCCGCAACGCGACGACATCACCATCCTGTCCTTCCGATTCGACTAG

Translation:

MAANWGLRGKSVVALLLACALALVPAVLLGWRAMDDIRTHFGLAYAKNFTLLHRQKILAPVSRELALSRRFA
ESVVTRDWLLKEDDPARRALFFREAEGYRGDFRDHAYFIIASGSQHYYFNDGSQPYSERPRYTLEAGDPEDA
WYFNTLRNSAAYNINVNVDSKLNLTKVWFNLVIRDQGRPIGLAGSGLDLSGFLDDFIIAREPGVTPMIVGDD
GAIQAHPDRRLIAYSSAAGGASERHRVFDLLDQPEQRDALREAMRLARAKAGSVHCLWAGLDGRQQLFAVAY
IPQLRWYVLTAVDLHAAQVLDNRWLWPLAGTFLLLLVALLLGFAYAVERLLLRPLRSLKRSAKAIAAGRYDT
PLPLARQDEIGSLSKAFASMADQVRRHTAELEDKVQERTQALEEANREMAAAQKKIGDSLDYASLIQRAILP
DRQLSATLGEHHFILWKPRDVVGGDFYVYREQADGYLIGVVDCAGHGVPGALMTMLARAAIDHAIEAVGSRD
PAAILGETDQAMRSMLSQEQIPQALATNMDAGLVWVDRRRRQLAFAGAKISLYASDGEEVQELKGARRAIGD
KRRGDYRNIEVPLAPGWTFYLSTDGFLDQAGGEHGFGFGSRRFADMLRDHARQPLPEQAEAFVATLAEYQGE
HPQRDDITILSFRFD*

AnnotationID:356 GeneID:347

AnnotatorUID: diggins

Modification Date/Time: 2005-03-23 07:07:09

Gene Name:

Confidence Code: 3

GeneProduct: putative serine phosphatase

Cell Localization: ()

Synonyms: PA0172

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2208

Secondary Functional Category(ies): signal transduction mechanism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit 
[Signal transduction mechanisms / Transcription]
CD-Length = 367 residues,  99.7% aligned
Score =  205 bits (522), Expect = 2e-53
Identities = 80/374 (21%), Positives = 128/374 (34%), Gaps = 11/374 (2%)

Genomic Context:

Comment:

ReferenceID:697

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17839

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33532

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 347_cdd.html

URL:

Homologs By Global Alignment

Gene ID:347

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

578 PA0172_tr translation of PA0172 663 99.69 99.69 0 3410.0

27802 gb|AAG03562.1|AE004455_3 (AE004455) hypothetical protein PA0172 [Pseudomonas aeruginosa PAO1] 663 99.69 99.69 0 3410.0

GC ORFID: `43349`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0172`	Glimmer Score:
Start: `5996947`	Stop: `5994956`
Length: `1992`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0172 translation of PA0172`	Homolog Bit Score `1318.0`
Other Homologs: `t_PA0172 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCGGCGAACTGGGGGTTGCGCGGCAAATCGGTGGTGGCGCTGTTGCTGGCCTGTGCCCTGGCACTGGTC CCGGCGGTGCTGCTGGGCTGGCGCGCGATGGACGACATCCGTACGCACTTCGGCCTGGCCTACGCGAAGAAC TTCACCCTGCTGCACCGGCAGAAGATCCTCGCCCCGGTCTCCCGCGAACTGGCGTTGTCGCGCCGTTTCGCC GAATCGGTGGTGACCCGCGACTGGCTGCTGAAGGAAGACGACCCGGCGCGCCGCGCGCTGTTCTTCCGCGAG GCCGAGGGCTACCGCGGCGACTTCCGCGACCACGCCTACTTCATCATCGCCAGCGGCTCCCAGCACTACTAC TTCAACGACGGCAGCCAACCCTACAGCGAACGGCCGCGCTACACCCTGGAGGCCGGCGACCCGGAAGACGCC TGGTACTTCAATACCCTGCGCAACAGCGCCGCCTACAACATCAACGTCAATGTCGACAGCAAGTTGAACCTG ACCAAGGTCTGGTTCAACCTGGTGATCCGCGACCAGGGCCGGCCCATCGGCCTGGCCGGCAGCGGCCTGGAC CTGAGCGGCTTCCTCGACGACTTCATCATCGCCCGCGAGCCGGGCGTGACGCCGATGATCGTCGGCGACGAC GGCGCCATCCAGGCCCACCCGGACCGCCGCCTGATCGCCTACAGCTCCGCCGCCGGCGGCGCCAGCGAACGC CACCGGGTGTTCGACCTGCTCGACCAGCCGGAACAGCGCGACGCCCTGCGCGAGGCCATGCGCCTGGCCCGC GCCAAGGCCGGCTCGGTGCACTGCCTGTGGGCCGGCCTCGACGGCCGCCAGCAACTCTTCGCCGTGGCCTAC ATTCCCCAACTGCGCTGGTACGTGCTCACCGCCGTCGACCTGCACGCCGCCCAGGTCCTCGACAACCGCTGG CTTTGGCCGCTGGCGGGCACGTTCCTGCTGTTGCTGGTGGCCCTGCTGCTGGGCTTCGCCTATGCCGTCGAG CGCCTGCTGTTGCGCCCCCTGCGCAGCCTCAAGCGCTCGGCCAAGGCGATCGCCGCCGGGCGCTACGACACG CCGCTGCCGCTGGCGCGCCAGGACGAGATCGGCTCGCTGTCGAAGGCCTTCGCCAGCATGGCCGACCAAGTC CGCCGGCACACCGCCGAGCTGGAAGACAAGGTCCAGGAGCGCACCCAGGCGCTGGAGGAAGCCAACCGCGAG ATGGCCGCCGCGCAGAAGAAGATCGGCGACAGCCTCGACTACGCCAGCCTGATCCAGCGCGCGATCCTCCCC GACCGCCAGCTCAGCGCCACCCTCGGCGAGCATCACTTCATCCTGTGGAAACCGCGCGACGTGGTCGGCGGC GACTTCTACGTGTACCGCGAGCAGGCCGACGGCTACCTGATCGGCGTGGTCGACTGCGCCGGTCACGGCGTG CCCGGCGCGCTGATGACCATGCTCGCCCGCGCCGCCATCGACCACGCCATCGAGGCGGTGGGCAGCCGCGAC CCGGCGGCGATCCTCGGCGAGACCGACCAGGCGATGCGCAGCATGCTCAGCCAGGAGCAGATCCCCCAGGCG CTGGCCACCAACATGGATGCCGGGCTGGTCTGGGTCGACCGCCGGCGCCGCCAGCTGGCCTTCGCCGGGGCG AAGATCTCGCTGTACGCCAGCGACGGCGAGGAGGTCCAGGAACTCAAGGGCGCGCGCCGGGCGATCGGCGAC AAGCGCCGTGGCGACTACCGCAACATCGAGGTACCGCTGGCGCCGGGCTGGACCTTCTACCTGAGCACCGAC GGTTTCCTCGACCAGGCCGGCGGCGAACACGGCTTCGGCTTCGGCAGCCGGCGCTTCGCCGACATGCTCCGC GACCACGCGCGGCAGCCGCTCCCCGAGCAGGCCGAGGCCTTCGTGGCGACGCTCGCCGAGTACCAGGGCGAG CACCCGCAACGCGACGACATCACCATCCTGTCCTTCCGATTCGACTAG