ViewGene
Locus Name:
GeneID:
Location:

GeneID:3468
TrivialName: PA14_13610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13610
PAO1 Ortholog Locus:PA3888
Sequence Length:723
Protein Length:240
Start: 1171112
Stop: 1170390
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07275.1|AE004806_2 (AE004806) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 240/240 (100%), Positives = 240/240 (100%)
Sequence:
ATGGTGAAAACCTGTGGCAAGGCCCTGCTCGGCCTCTGCGCCGCAGCCGCCGTACTGGCCTTGCTGATCCAC
TGGATCACCCCCGCGACCATCCTCCACTACCGCGAGGACCTGCTGTTCTACTTGCAGGCCCACCTGGTGCTG
GTCTTCAGTTCGATGGCGGCCGCCCTGCTGGTCGGCGTGCCGGCCGGCATCCTGCTCAGCCGTCCCGGCATG
CAGGCCCAGGCCGAACGCCTGATGCAGGTGTTCAACGTCGGCAACACCATCCCGCCGCTGGCGGTGCTGGCC
ATCGCCCTGGCGATCATCGGCATCGGCAACGGCCCGGCGATCCTCGCCCTGTTCCTCGCCTCGCTGCTGCCG
ATCGTGCGCAACACCTACGAGGGCCTGCGCAATGTCTCGCCGGCGCTGAAGGAAGCCGCCACCGGCATCGGC
ATGACGCCCAACCAGGTGCTGCTGCGGGTGGAACTGCCGAACGCGGTGCCGATCATCGTCGGCGGCGTGCGC
GTGGCCCTGGCGCTGAACGTCGGCTCCGCGCCGCTGGCGTTCCTGATCGGCGCCAACAGCCTGGGCAGCCTG
ATCTTCCCCGGCATCTACCTGAACAACCACCAGCAACTGCTGCTCGGCGCCGCCTGCACGGCGCTCCTCGCC
CTGCTGCTGGACGCCCTGGTGGTGCTGTTCAGCCGCATGTTCCTGGAACGCGGCCTGACCGCCAAGGAGGCC
TGA
Translation:
MVKTCGKALLGLCAAAAVLALLIHWITPATILHYREDLLFYLQAHLVLVFSSMAAALLVGVPAGILLSRPGM
QAQAERLMQVFNVGNTIPPLAVLAIALAIIGIGNGPAILALFLASLLPIVRNTYEGLRNVSPALKEAATGIG
MTPNQVLLRVELPNAVPIIVGGVRVALALNVGSAPLAFLIGANSLGSLIFPGIYLNNHQQLLLGAACTALLA
LLLDALVVLFSRMFLERGLTAKEA*
AnnotationID:3476GeneID:3468
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 14:02:46
Gene Name:
Confidence Code:3
GeneProduct:putative permease component of an ABC-type transpo
Cell Localization:()
Synonyms:PA3888
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1174
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58024.1| (AE016872) glycine betaine/carnitine/choline ABC transporter,
           permease protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 237

 Score =  344 bits (883), Expect = 2e-94
 Identities = 178/235 (75%), Positives = 200/235 (85%)

>gb|AAO69059.1| (AE016838) putative ABC transporter membrane protein [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 236

 Score =  248 bits (632), Expect = 3e-65
 Identities = 135/223 (60%), Positives = 166/223 (74%), Gaps = 1/223 (0%)






 
Structural Features:
COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 221 residues,  98.2% aligned
Score =  176 bits (449), Expect = 3e-45
Identities = 104/219 (47%), Positives = 143/219 (65%), Gaps = 4/219 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6939




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24081




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31678




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3468_cdd.hmtl


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3468
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5525
                           PA3888_tr
                           translation of PA3888
                           240
                           99.99
                           99.99
                           0
                           1173.0
     

     
     
153952
                           gb|AAG07275.1|AE004806_2
                           (AE004806) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           240
                           99.99
                           99.99
                           0
                           1173.0
     

     
     
153953
                           gb|AAO58024.1|
                           (AE016872) glycine betaine/carnitine/choline ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           240
                           74.16
                           83.33
                           3
                           882.0
     

     
     
153954
                           gb|AAN66496.1|AE016278_7
                           (AE016777) glycine betaine/carnitine/choline ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           250
                           72.40
                           78.40
                           13
                           862.0
     

     
     
153955
                           gb|AAQ58869.1|
                           (AE016914) probable ABC-type transport systems, permease components [Chromobacterium violaceum ATCC 12472]
                           242
                           58.67
                           70.66
                           6
                           662.0
     

     






      

          
GC ORFID: 46470How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3888Glimmer Score: 

          
Start: 3782826Stop: 3783548

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3888 translation of PA3888Homolog Bit Score 456.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5420 (ORF: BLASTX 344.0), psyr_15may02_Scaffold4_revised_gene5422 (ORF: BLASTX 137.0), t_PA3890 (ORF: BLASTX 135.0), t_PA3888 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGAAAACCTGTGGCAAGGCCCTGCTCGGCCTCTGCGCCGCAGCCGCCGTACTGGCCTTGCTGATCCAC 
TGGATCACCCCCGCGACCATCCTCCACTACCGCGAGGACCTGCTGTTCTACTTGCAGGCCCACCTGGTGCTG 
GTCTTCAGTTCGATGGCGGCCGCCCTGCTGGTCGGCGTGCCGGCCGGCATCCTGCTCAGCCGTCCCGGCATG 
CAGGCCCAGGCCGAACGCCTGATGCAGGTGTTCAACGTCGGCAACACCATCCCGCCGCTGGCGGTGCTGGCC 
ATCGCCCTGGCGATCATCGGCATCGGCAACGGCCCGGCGATCCTCGCCCTGTTCCTCGCCTCGCTGCTGCCG 
ATCGTGCGCAACACCTACGAGGGCCTGCGCAATGTCTCGCCGGCGCTGAAGGAAGCCGCCACCGGCATCGGC 
ATGACGCCCAACCAGGTGCTGCTGCGGGTGGAACTGCCGAACGCGGTGCCGATCATCGTCGGCGGCGTGCGC 
GTGGCCCTGGCGCTGAACGTCGGCTCCGCGCCGCTGGCGTTCCTGATCGGCGCCAACAGCCTGGGCAGCCTG 
ATCTTCCCCGGCATCTACCTGAACAACCACCAGCAACTGCTGCTCGGCGCCGCCTGCACGGCGCTCCTCGCC 
CTGCTGCTGGACGCCCTGGTGGTGCTGTTCAGCCGCATGTTCCTGGAACGCGGCCTGACCGCCAAGGAGGCC 
TGA