ViewGene
Locus Name:
GeneID:
Location:

GeneID:3467
TrivialName: PA14_27740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27740
PAO1 Ortholog Locus:PA2814
Sequence Length:672
Protein Length:223
Start: 2406305
Stop: 2406976
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06202.1|AE004708_8 (AE004708) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 221/223 (99%), Positives = 221/223 (99%)
Sequence:
ATGCAGTCCTACCTACAATCCGGCCGCTTCGTGGATAGTGACCACCCCGTGGTGGTGGAGTTCGCGGAAAAA
TCCCGGGGGAATTCGGCGAAACCGCGTGACCAGGCGGTCGCGCTGTACTACGCGGTACGCGACGGGGTGCAC
TACAACCCCTACGTGTTCAGCCGCGATCCGCAGACCCTGAAGGCCAGCCACGCGCTGCAGCAGGGCGAGTCC
TATTGCGTGCCCAAGGCCATCCTGCTCGCCGCCTGCGCCCGGCATTGCCGGATTCCGGCGCGGATCGGCCTG
GCCGACGTGCGCAACCACCTGGCCACGCCGCGCCTGCTGGAAGCGCTGCGCAGCGAGGTGTTCGCCATGCAC
GGCTATACCGAGCTGTACCTCGAGGGCCGTTGGGTGAAGGCCACCCCGGCGTTCAACCGTGCCTTGTGCCGC
GCCTTCGACGTCGCTCCGCTGGAGTTCGACGGCGTCGCCGACAGCGTCTTCCATCCGTTCAACCGCCAGGGC
GAGCGCTACATGGAGTACCTGGTCGATCACGGCCAGTTCGCCGACCTGCCGGAGGAACTGTTCTTCTCTCAC
CTGCAGCAGCACTATCCGCACCTGTTCTCCGGCCGCCCGCTGGCCCTGGATGGCGATTTCCAGGCCGAGGCC
GGACAAGATGAAGGGCGTCGATAG
Translation:
MQSYLQSGRFVDSDHPVVVEFAEKSRGNSAKPRDQAVALYYAVRDGVHYNPYVFSRDPQTLKASHALQQGES
YCVPKAILLAACARHCRIPARIGLADVRNHLATPRLLEALRSEVFAMHGYTELYLEGRWVKATPAFNRALCR
AFDVAPLEFDGVADSVFHPFNRQGERYMEYLVDHGQFADLPEELFFSHLQQHYPHLFSGRPLALDGDFQAEA
GQDEGRR*
AnnotationID:3475GeneID:3467
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 10:10:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2814
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6937




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36232




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3467_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3467
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5524
                           PA2814_tr
                           translation of PA2814
                           223
                           99.10
                           99.10
                           0
                           1174.0
     

     
     
153949
                           gb|AAG06202.1|AE004708_8
                           (AE004708) hypothetical protein PA2814 [Pseudomonas aeruginosa PAO1]
                           223
                           99.10
                           99.10
                           0
                           1174.0
     

     
     
153950
                           emb|CAE27085.1|
                           (BX572598) conserved unknown protein [Rhodopseudomonas palustris CGA009]
                           251
                           38.64
                           52.58
                           30
                           479.0
     

     
     
153951
                           gb|AAN38722.1|
                           (AF513500) hypothetical protein [Mycobacterium abscessus]
                           238
                           37.39
                           51.26
                           36
                           439.0
     

     






      

          
GC ORFID: 46469How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2814Glimmer Score: 

          
Start: 2547622Stop: 2546951

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2814 translation of PA2814Homolog Bit Score 456.0

          
Other Homologs:  t_PA2814 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGTCCTACCTACAATCCGGCCGCTTCGTGGATAGTGACCACCCCGTGGTGGTGGAGTTCGCGGAAAAA 
TCCCGGGGGAATTCGGCGAAACCGCGTGACCAGGCGGTCGCGCTGTACTACGCGGTACGCGACGGGGTGCAC 
TACAACCCCTACGTGTTCAGCCGCGATCCGCAGACCCTGAAGGCCAGCCACGCGCTGCAGCAGGGCGAGTCC 
TATTGCGTGCCCAAGGCCATCCTGCTCGCCGCCTGCGCCCGGCATTGCCGGATTCCGGCGCGGATCGGCCTG 
GCCGACGTGCGCAACCACCTGGCCACGCCGCGCCTGCTGGAAGCGCTGCGCAGCGAGGTGTTCGCCATGCAC 
GGCTATACCGAGCTGTACCTCGAGGGCCGTTGGGTGAAGGCCACCCCGGCGTTCAACCGTGCCTTGTGCCGC 
GCCTTCGACGTCGCTCCGCTGGAGTTCGACGGCGTCGCCGACAGCGTCTTCCATCCGTTCAACCGCCAGGGC 
GAGCGCTACATGGAGTACCTGGTCGATCACGGCCAGTTCGCCGACCTGCCGGAGGAACTGTTCTTCTCTCAC 
CTGCAGCAGCACTATCCGCACCTGTTCTCCGGCCGCCCGCTGGCCCTGGATGGCGATTTCCAGGCCGAGGCC 
GGACAAGATGAAGGGCGTCGATAG