ViewGene
Locus Name:
GeneID:
Location:

GeneID:3466
TrivialName: PA14_29000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29000
PAO1 Ortholog Locus:PA2719
Sequence Length:687
Protein Length:228
Start: 2508237
Stop: 2507551
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06107.1|AE004700_3 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/228 (98%), Positives = 225/228 (98%)
Sequence:
ATGACCAAGCGCATCCTGCACGTCGTCACCAACGTCGCCCACTATGCCGATCCGACCCAGCCCACCGGGCTG
TGGCTGTCGGAGTTGACCCATGCCTACGAGATCTTCGCCGCCCGGGGCTACCAGCAACGCCTGGTCAGCCCC
CGCGGCGGCGAGTCGCCGCTGGAGCCGCGCGCCCTCGGCTGGCCCCACGCCGACGCCAGCGCCAAGGCCTGG
CTGGCCGACGAGGCACGCCTGGCGCTGCTGGCCGACACTGCCGCTCCCGAGCAGGTCGACGCGGAGGCGTTC
GACGCCATCTATTTCACCGGCGGCCACGGCGTGATGTGGGACTTCCCCGACGACGCCGGGCTGCAGCGCCTG
ACCCGCGAGATCTACCAGCGCGGCGGCATCGTCTCGTCGGTCTGCCACGGCTATTGCGGCCTGCTCAACACA
CGCCTGGACGATGGCCGCCTGCTGGTCGCCGGGCGCCGCCTCACCGGCTACTCCTGGATCGAGGAAGTGCTC
GCCGGGGTCGCCCGCAAGGTGCCGTACAACGTCGAGGAAGAAATGAAACGACGCGGTGCGCTCTACGAAAGA
AGCCTGCTGCCGTTCACCAGCAAGGTGGTGGTCGACGACCGCCTGGTCACCGGGCAGAACCCGCAGTCGGCC
AAGGCCACGGCCGAGCAGGTGGCCGCCCTGCTCGGCTGA
Translation:
MTKRILHVVTNVAHYADPTQPTGLWLSELTHAYEIFAARGYQQRLVSPRGGESPLEPRALGWPHADASAKAW
LADEARLALLADTAAPEQVDAEAFDAIYFTGGHGVMWDFPDDAGLQRLTREIYQRGGIVSSVCHGYCGLLNT
RLDDGRLLVAGRRLTGYSWIEEVLAGVARKVPYNVEEEMKRRGALYERSLLPFTSKVVVDDRLVTGQNPQSA
KATAEQVAALLG*
AnnotationID:3474GeneID:3466
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 06:06:04
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:()
Synonyms:PA2719
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative ThiJ/PfpI family protein
Functional Category Confidence Code:5
COGs:COG0693
Secondary Functional Category(ies):transcriptional regulators
EC Number:3.4.-.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL54258.1| (AE009734) PROTEASE I [Brucella melitensis 16M]
          Length = 235

 Score =  353 bits (906), Expect = 4e-97
 Identities = 164/227 (72%), Positives = 194/227 (85%)

>gb|AAN33430.1|AE014524_5 (AE014524) ThiJ/PfpI family protein [Brucella suis 1330]
          Length = 235

 Score =  353 bits (906), Expect = 4e-97
 Identities = 164/227 (72%), Positives = 194/227 (85%)








 
Structural Features:
COG0693, ThiJ, Putative intracellular protease/amidase
CD-Length = 188 residues,  92.6% aligned
Score = 92.9 bits (230), Expect = 3e-20
Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 38/210 (18%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6935




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36317




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3466_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3466
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5523
                           PA2719_tr
                           translation of PA2719
                           228
                           98.68
                           98.68
                           0
                           1173.0
     

     
     
153936
                           gb|AAG06107.1|AE004700_3
                           (AE004700) hypothetical protein PA2719 [Pseudomonas aeruginosa PAO1]
                           228
                           98.68
                           98.68
                           0
                           1173.0
     

     
     
153937
                           gb|AAL54258.1|
                           (AE009734) PROTEASE I [Brucella melitensis 16M]
                           235
                           69.78
                           82.55
                           7
                           904.0
     

     
     
153938
                           gb|AAN33430.1|AE014524_5
                           (AE014524) ThiJ/PfpI family protein [Brucella suis 1330]
                           235
                           69.78
                           82.55
                           7
                           904.0
     

     
     
153942
                           gb|AAN69033.1|AE016536_1
                           (AE016786) ThiJ/PfpI family protein [Pseudomonas putida KT2440]
                           231
                           45.02
                           58.87
                           6
                           474.0
     

     






      

          
GC ORFID: 46468How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2719Glimmer Score: 

          
Start: 2445689Stop: 2446375

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2719 translation of PA2719Homolog Bit Score 456.0

          
Other Homologs:  t_PA2719 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAAGCGCATCCTGCACGTCGTCACCAACGTCGCCCACTATGCCGATCCGACCCAGCCCACCGGGCTG 
TGGCTGTCGGAGTTGACCCATGCCTACGAGATCTTCGCCGCCCGGGGCTACCAGCAACGCCTGGTCAGCCCC 
CGCGGCGGCGAGTCGCCGCTGGAGCCGCGCGCCCTCGGCTGGCCCCACGCCGACGCCAGCGCCAAGGCCTGG 
CTGGCCGACGAGGCACGCCTGGCGCTGCTGGCCGACACTGCCGCTCCCGAGCAGGTCGACGCGGAGGCGTTC 
GACGCCATCTATTTCACCGGCGGCCACGGCGTGATGTGGGACTTCCCCGACGACGCCGGGCTGCAGCGCCTG 
ACCCGCGAGATCTACCAGCGCGGCGGCATCGTCTCGTCGGTCTGCCACGGCTATTGCGGCCTGCTCAACACA 
CGCCTGGACGATGGCCGCCTGCTGGTCGCCGGGCGCCGCCTCACCGGCTACTCCTGGATCGAGGAAGTGCTC 
GCCGGGGTCGCCCGCAAGGTGCCGTACAACGTCGAGGAAGAAATGAAACGACGCGGTGCGCTCTACGAAAGA 
AGCCTGCTGCCGTTCACCAGCAAGGTGGTGGTCGACGACCGCCTGGTCACCGGGCAGAACCCGCAGTCGGCC 
AAGGCCACGGCCGAGCAGGTGGCCGCCCTGCTCGGCTGA