ViewGene

Locus Name:
GeneID:
Location:

GeneID:3465
TrivialName: PA14_44460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44460
PAO1 Ortholog Locus:PA1547
Sequence Length:684
Protein Length:227
Start: 3958764
Stop: 3959447
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04936.1|AE004583_1 (AE004583) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/227 (100%), Positives = 227/227 (100%)
Sequence:
GTGGCTGAACTGGCGCCGTTGCTGGTTTCCGCGCTGATCCTCGGCCTGCTCGGGGGAGGCCACTGCCTGGGC
ATGTGCGGCGGCCTGATGGGCGCCCTGACCCTGGCCATTCCCGCCGAACAGCGCGGCCGTCGTCTGCGCCTG
CTGCTGGCCTACAACCTCGGCCGCATCCTCAGCTACGCCTGCGCCGGCCTGCTGCTCGGCCTGGCCGGCTGG
GCGGTGGCGCGCACCCCGTTGGCCGGCGCGCTGCGGGTGGTCGCCGGGCTGCTGCTGATCGCCATGGGACTC
TACCTGGCCGGCTGGTGGAGCGGCCTGACCCGCGTCGAGGCGCTCGGTCGCGGCCTCTGGCGCCACCTGGAA
CCCTTCGCCCGGCGCCTGCTGCCGGTCTCCAGCCTGCCACGGGCCCTGCTGCTCGGAGCGATCTGGGGCTGG
CTGCCCTGCGGGCTGGTCTACAGCACCCTGCTCTGGGCCACCAGCCAGGGATCGGCACTGGACAGCGCGCTG
CTGATGCTGGCGTTCGGCCTCGGCACCTGGCCGGTTCTGCTGGCCACCGGCATGGCCGCCGAACGGGTGACC
GCCCTGCTGCGCCGTCGCGGCGTACGCATCGTGGGCGGCCTGATGGTCATCCTCTTCGGCCTCTGGACCCTC
CCAGGACCGCACCAGGCCTGGCTGATGGGGCATTGA
Translation:
MAELAPLLVSALILGLLGGGHCLGMCGGLMGALTLAIPAEQRGRRLRLLLAYNLGRILSYACAGLLLGLAGW
AVARTPLAGALRVVAGLLLIAMGLYLAGWWSGLTRVEALGRGLWRHLEPFARRLLPVSSLPRALLLGAIWGW
LPCGLVYSTLLWATSQGSALDSALLMLAFGLGTWPVLLATGMAAERVTALLRRRGVRIVGGLMVILFGLWTL
PGPHQAWLMGH*
AnnotationID:3473GeneID:3465
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 09:09:20
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1547
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69843.1|AE016623_5 (AE016790) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 227

 Score =  392 bits (1007), Expect = e-109
 Identities = 190/227 (83%), Positives = 207/227 (91%)

>gb|AAO55512.1| (AE016862) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 227

 Score =  387 bits (994), Expect = e-107
 Identities = 184/227 (81%), Positives = 204/227 (89%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:14851
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24075
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3465

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5522 PA1547_tr translation of PA1547 227 99.99 99.99 0 1174.0
153926 gb|AAG04936.1|AE004583_1 (AE004583) hypothetical protein PA1547 [Pseudomonas aeruginosa PAO1] 227 99.55 99.99 0 1171.0
153927 gb|AAN69843.1|AE016623_5 (AE016790) membrane protein, putative [Pseudomonas putida KT2440] 227 83.25 91.18 0 1003.0
153928 gb|AAO55512.1| (AE016862) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 227 80.61 89.86 0 990.0
153930 gb|AAQ60732.1| (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 241 45.22 57.26 30 476.0
GC ORFID: 46467How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1547Glimmer Score:
Start: 995145Stop: 994462
Length: 684
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1547 translation of PA1547Homolog Bit Score 456.0
Other Homologs: t_PA1547 (ORF: GLIMMER)
GC ORF Sequence
GTGGCTGAACTGGCGCCGTTGCTGGTTTCCGCGCTGATCCTCGGCCTGCTCGGGGGAGGCCACTGCCTGGGC
ATGTGCGGCGGCCTGATGGGCGCCCTGACCCTGGCCATTCCCGCCGAACAGCGCGGCCGTCGTCTGCGCCTG
CTGCTGGCCTACAACCTCGGCCGCATCCTCAGCTACGCCTGCGCCGGCCTGCTGCTCGGCCTGGCCGGCTGG
GCGGTGGCGCGCACCCCGTTGGCCGGCGCGCTGCGGGTGGTCGCCGGGCTGCTGCTGATCGCCATGGGACTC
TACCTGGCCGGCTGGTGGAGCGGCCTGACCCGCGTCGAGGCGCTCGGTCGCGGCCTCTGGCGCCACCTGGAA
CCCTTCGCCCGGCGCCTGCTGCCGGTCTCCAGCCTGCCACGGGCCCTGCTGCTCGGAGCGATCTGGGGCTGG
CTGCCCTGCGGGCTGGTCTACAGCACCCTGCTCTGGGCCACCAGCCAGGGATCGGCACTGGACAGCGCGCTG
CTGATGCTGGCGTTCGGCCTCGGCACCTGGCCGGTTCTGCTGGCCACCGGCATGGCCGCCGAACGGGTGACC
GCCCTGCTGCGCCGTCGCGGCGTACGCATCGTGGGCGGCCTGATGGTCATCCTCTTCGGCCTCTGGACCCTC
CCAGGACCGCACCAGGCCTGGCTGATGGGGCATTGA