ViewGene
Locus Name:
GeneID:
Location:

GeneID:3464
TrivialName: PA14_54330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54330
PAO1 Ortholog Locus:PA0770
Sequence Length:690
Protein Length:229
Start: 4819228
Stop: 4818539
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04159.1|AE004512_2 (AE004512) ribonuclease III [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
GTGAGTAATTCGCTGGACCGACTCGAGCGCAAGCTCGGCTATACCTTCAAAGACCGGGACCTGATGGTCCTG
GCCCTGACCCATCGCAGCTACGCCGGGCGCAACAACGAGCGCTTGGAGTTCCTCGGTGACGCCATTCTCAAC
TTCGTCATCGGCGAGGCGCTGTTCCACCACTTCCCGCAGGCTCGCGAAGGCCAGCTTTCGCGCCTGCGCGCG
CGACTGGTCAAGGGCGAGACCCTGGCCCTGCTGGCGCGCGGCTTCGAGGTGGGCGACTACCTGCGGCTGGGC
TCGGGCGAGCTGAAGAGCGGCGGGTTCCGCCGCGAGTCGATCCTCGCCGATGCGATGGAAGCCCTGATCGGC
GCCATCTACCTGGATACCGGCATGGACTCCGCGCGCGAGCGGATCATCGCCTGGCTCGGACCGCAACTGCGC
GAGCTGACCCCGGTGGACACCAACAAGGACCCCAAGACCCGCCTGCAGGAGTTCCTGCAGTCGCGTGGCTGC
GACCTGCCGCGCTACGAGGTGGTGGATATCCAGGGCGAACCCCATTGCCGGACCTTCTTCGTCGATTGCGAA
GTGGCCCTGCTGAGCGACAAGACCCACGGGCACGGCGGCAGCCGCCGCATCGCCGAGCAGGTGGCCGCGGCC
GCCGCGCTGGTGGCCCTGGGCGTGGAGAATGGCCATGACTGA
Translation:
MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNNERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRA
RLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYLDTGMDSARERIIAWLGPQLR
ELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQVAAA
AALVALGVENGHD*
AnnotationID:3472GeneID:3464
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:16
Gene Name:rnc
Confidence Code:2
GeneProduct:ribonuclease III
Cell Localization:(1) Cytoplasmic
Synonyms:PA0770
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0571
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]
       CD-Length = 235 residues,  97.9% aligned
       Score =  269 bits (689), Expect = 4e-73






   
Genomic Context:
The gene sequence lepA-lep-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa.






   
Comment:


















    ReferenceID:14849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3464
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5521
                           PA0770_tr
                           translation of PA0770
                           229
                           99.99
                           99.99
                           0
                           1172.0
     

     
     
153857
                           gb|AAG04159.1|AE004512_2
                           (AE004512) ribonuclease III [Pseudomonas aeruginosa PAO1]
                           229
                           99.56
                           99.99
                           0
                           1169.0
     

     
     
153858
                           gb|AAD40229.1|AF123492_1
                           (AF123492) RNase III [Pseudomonas aeruginosa]
                           229
                           99.56
                           99.99
                           0
                           1169.0
     

     
     
153859
                           gb|AAO57673.1|
                           (AE016871) ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
                           229
                           82.96
                           92.57
                           0
                           985.0
     

     
     
153860
                           gb|AAN67055.1|AE016334_4
                           (AE016779) ribonuclease III [Pseudomonas putida KT2440]
                           229
                           82.96
                           90.82
                           0
                           966.0
     

     






      

          
GC ORFID: 46466How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0770Glimmer Score: 

          
Start: 134679Stop: 135368

          
Length: 690


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0770 translation of PA0770Homolog Bit Score 456.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6219 (ORF: BLASTX 384.0), t_PA0770 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTAATTCGCTGGACCGACTCGAGCGCAAGCTCGGCTATACCTTCAAAGACCGGGACCTGATGGTCCTG 
GCCCTGACCCATCGCAGCTACGCCGGGCGCAACAACGAGCGCTTGGAGTTCCTCGGTGACGCCATTCTCAAC 
TTCGTCATCGGCGAGGCGCTGTTCCACCACTTCCCGCAGGCTCGCGAAGGCCAGCTTTCGCGCCTGCGCGCG 
CGACTGGTCAAGGGCGAGACCCTGGCCCTGCTGGCGCGCGGCTTCGAGGTGGGCGACTACCTGCGGCTGGGC 
TCGGGCGAGCTGAAGAGCGGCGGGTTCCGCCGCGAGTCGATCCTCGCCGATGCGATGGAAGCCCTGATCGGC 
GCCATCTACCTGGATACCGGCATGGACTCCGCGCGCGAGCGGATCATCGCCTGGCTCGGACCGCAACTGCGC 
GAGCTGACCCCGGTGGACACCAACAAGGACCCCAAGACCCGCCTGCAGGAGTTCCTGCAGTCGCGTGGCTGC 
GACCTGCCGCGCTACGAGGTGGTGGATATCCAGGGCGAACCCCATTGCCGGACCTTCTTCGTCGATTGCGAA 
GTGGCCCTGCTGAGCGACAAGACCCACGGGCACGGCGGCAGCCGCCGCATCGCCGAGCAGGTGGCCGCGGCC 
GCCGCGCTGGTGGCCCTGGGCGTGGAGAATGGCCATGACTGA