ViewGene
Locus Name:
GeneID:
Location:

GeneID:3463
TrivialName: PA14_07790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07790
PAO1 Ortholog Locus:PA0597
Sequence Length:675
Protein Length:224
Start: 670488
Stop: 671162
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD22456.1|AF116284_2 (AF116284) unknown [Pseudomonas aeruginosa]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGAAGGCGATGATCCTCGCCGCCGGCCGTGGCGAGCGCATGCGGCCGACCACCCTGCACACGCCCAAGCCG
CTGATCGAGGCCGCCGGCGTGCCATTGATCGAGCGTCAGTTGCTGGCGCTGCGCCAGGCCGGAGTCGACGAC
TGGGTGATCAACCATGCCTGGCTTGGCGAGCAGATCGAGGCCTATCTCGGCGACGGCTCGCGCCTGGGCGGG
CGGATCGCCTATTCACCCGAGGGAGAACCGCTGGAAACCGGCGGTGGAATCTTCCGCGCCCTGCCGTTGCTC
GGCGAGCAGCCGTTCCTGTTGCTCAACGGCGATGTCTGGAGCGACTTCGACTACTCTCGGCTGCATCTTGCC
GACGGCGACCTGGCGCATCTGGTGCTGGTCGACAACCCGGCGCACCATCCCGCCGGCGATTTCCACCTGGAT
GCCGGCGGACGGGTGGGCGAGACCCGCGAAGCGGGCGGCAACCTGACCTACAGCGGGATCGCCGTACTGCAT
CCCGCGCTGTTCGAGGGCTGCCAGCCGGGCGCCTTCAAGCTGGCGCCGCTATTGCGCAAGGCCATCGCCGCG
GGGCGGGTCAGCGGCGAACACTATCGTGGGCAGTGGGTCGACGTCGGTACCCACGAGCGCCTGGCGGAAGTC
GAGCGATTGCTGGCGGAGCACGCCTGA
Translation:
MKAMILAAGRGERMRPTTLHTPKPLIEAAGVPLIERQLLALRQAGVDDWVINHAWLGEQIEAYLGDGSRLGG
RIAYSPEGEPLETGGGIFRALPLLGEQPFLLLNGDVWSDFDYSRLHLADGDLAHLVLVDNPAHHPAGDFHLD
AGGRVGETREAGGNLTYSGIAVLHPALFEGCQPGAFKLAPLLRKAIAAGRVSGEHYRGQWVDVGTHERLAEV
ERLLAEHA*
AnnotationID:3471GeneID:3463
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 11:11:29
Gene Name:
Confidence Code:3
GeneProduct:putative nucleotidyltransferase
Cell Localization:()
Synonyms:PA0597
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00483
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66036.1|AE016233_2 (AE016775) nucleotidyltransferase family protein [Pseudomonas
           putida KT2440]
          Length = 223

 Score =  321 bits (823), Expect = 2e-87
 Identities = 161/224 (71%), Positives = 182/224 (81%), Gaps = 1/224 (0%)

>gb|AAO54098.1| (AE016857) nucleotidyltransferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 210

 Score =  288 bits (737), Expect = 2e-77
 Identities = 140/209 (66%), Positives = 164/209 (78%), Gaps = 1/209 (0%)






 
Structural Features:
pfam00483, NTP_transferase, Nucleotidyl transferase. 
CD-Length = 246 residues,  99.6% aligned
Score = 94.1 bits (234), Expect = 1e-20
Identities = 64/245 (26%), Positives = 92/245 (37%), Gaps = 24/245 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6929




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33887




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3463_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3463
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
153838
                           gb|AAD22456.1|AF116284_2
                           (AF116284) unknown [Pseudomonas aeruginosa]
                           224
                           99.99
                           99.99
                           0
                           1182.0
     

     
     
5520
                           PA0597_tr
                           translation of PA0597
                           224
                           99.55
                           99.99
                           0
                           1177.0
     

     
     
153839
                           gb|AAG03986.1|AE004496_2
                           (AE004496) probable nucleotidyl transferase [Pseudomonas aeruginosa PAO1]
                           224
                           99.55
                           99.99
                           0
                           1177.0
     

     
     
153840
                           gb|AAN66036.1|AE016233_2
                           (AE016775) nucleotidyltransferase family protein [Pseudomonas putida KT2440]
                           224
                           71.87
                           81.25
                           1
                           825.0
     

     
     
153841
                           gb|AAO54098.1|
                           (AE016857) nucleotidyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           224
                           62.50
                           73.21
                           14
                           736.0
     

     






      

          
GC ORFID: 46465How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0597Glimmer Score: 

          
Start: 6471831Stop: 6472505

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0597 translation of PA0597Homolog Bit Score 457.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6683 (ORF: BLASTX 310.0), t_PA0597 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGCGATGATCCTCGCCGCCGGCCGTGGCGAGCGCATGCGGCCGACCACCCTGCACACGCCCAAGCCG 
CTGATCGAGGCCGCCGGCGTGCCATTGATCGAGCGTCAGTTGCTGGCGCTGCGCCAGGCCGGAGTCGACGAC 
TGGGTGATCAACCATGCCTGGCTTGGCGAGCAGATCGAGGCCTATCTCGGCGACGGCTCGCGCCTGGGCGGG 
CGGATCGCCTATTCACCCGAGGGAGAACCGCTGGAAACCGGCGGTGGAATCTTCCGCGCCCTGCCGTTGCTC 
GGCGAGCAGCCGTTCCTGTTGCTCAACGGCGATGTCTGGAGCGACTTCGACTACTCTCGGCTGCATCTTGCC 
GACGGCGACCTGGCGCATCTGGTGCTGGTCGACAACCCGGCGCACCATCCCGCCGGCGATTTCCACCTGGAT 
GCCGGCGGACGGGTGGGCGAGACCCGCGAAGCGGGCGGCAACCTGACCTACAGCGGGATCGCCGTACTGCAT 
CCCGCGCTGTTCGAGGGCTGCCAGCCGGGCGCCTTCAAGCTGGCGCCGCTATTGCGCAAGGCCATCGCCGCG 
GGGCGGGTCAGCGGCGAACACTATCGTGGGCAGTGGGTCGACGTCGGTACCCACGAGCGCCTGGCGGAAGTC 
GAGCGATTGCTGGCGGAGCACGCCTGA