ViewGene
Locus Name:
GeneID:
Location:

GeneID:3462
TrivialName: PA14_03630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03630
PAO1 Ortholog Locus:PA0279
Sequence Length:699
Protein Length:232
Start: 327382
Stop: 328080
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03668.1|AE004466_2 (AE004466) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 231/232 (99%)
Sequence:
ATGCAATTCAATCCCGGCTTCAGTTCGCTGGCGGCGCTGCTCGCCGATCCCGGTCGCGCGCAGATGATCTGG
GCACTGATGGATGGCAGCGCCCGCCCGGCCAGCGAGCTGGCGCTGCTGGCAGGCGTTTCGCCGTCCTCCGCC
AGCGGCCACCTGGGACGGCTGGTCGAGGGCGGCGTGCTGAGCCTGGAGGCGCGCGGGCGCAATCGCTTCTAT
CGCCTGGCCGGGCCGGAAGTGGGGCAGGCGGTGGAAGCGCTGGCCAGCGCCTCCCTGGCCCTGCAGCCGCAG
CGGCGCAGCCTGCCGCCGAGCCACGGCACGCCGTCGGCGTTGCGCGAGGCGCGGACCTGCTACGACCACCTG
GCCGGCGAACTCGCGGTCGGTGTGTTCGCACGGATGCTGGATGCCGGCTGGATCGAGCAGGAGGGCAGGACG
CTGCGCCTGAGCGCGACCGGCGAGGCCGGGCTGGCCGGGTTGGGGATCGACCTGGCGGAGGTCCGCCGCCGC
CGTCGGCAGTTCGCCTGCGCCTGCCCCGACTGGAGCGAACGCAAGCCGCACCTCGGCGGCGCGCTGGGGGCG
GCGTTGCTGGAGGCCTGTCTGCGCCAGGGCTGGTTGCGGCCGCAGGACGGCTCGCGGGCGTTGCAGGTGTCG
CCGAAGGGCCGCGCGGGACTGCGCGGCCTGGCGGAACGCACGGCGGGCTGA
Translation:
MQFNPGFSSLAALLADPGRAQMIWALMDGSARPASELALLAGVSPSSASGHLGRLVEGGVLSLEARGRNRFY
RLAGPEVGQAVEALASASLALQPQRRSLPPSHGTPSALREARTCYDHLAGELAVGVFARMLDAGWIEQEGRT
LRLSATGEAGLAGLGIDLAEVRRRRRQFACACPDWSERKPHLGGALGAALLEACLRQGWLRPQDGSRALQVS
PKGRAGLRGLAERTAG*
AnnotationID:3470GeneID:3462
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, ArsR family
Cell Localization:()
Synonyms:PA0279
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00418
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54298.1| (AE016858) transcriptional regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 230

 Score =  233 bits (595), Expect = 5e-61
 Identities = 120/229 (52%), Positives = 156/229 (68%), Gaps = 4/229 (1%)

>emb|CAE36355.1| (BX640426) putative ArsR-family transcriptional regulator
           [Bordetella parapertussis]
          Length = 235

 Score =  193 bits (491), Expect = 6e-49
 Identities = 102/212 (48%), Positives = 142/212 (66%), Gaps = 5/212 (2%)








 
Structural Features:
smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor
CD-Length = 79 residues,  91.1% aligned
Score = 55.2 bits (133), Expect = 6e-09
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6927




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33621




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3462_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3462
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5519
                           PA0279_tr
                           translation of PA0279
                           232
                           99.56
                           99.56
                           0
                           1176.0
     

     
     
153821
                           gb|AAG03668.1|AE004466_2
                           (AE004466) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           232
                           99.56
                           99.56
                           0
                           1176.0
     

     
     
153822
                           gb|AAO54298.1|
                           (AE016858) transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           234
                           51.28
                           66.66
                           6
                           598.0
     

     
     
153825
                           gb|AAN66217.1|AE016249_9
                           (AE016776) transcriptional regulator, ArsR family [Pseudomonas putida KT2440]
                           238
                           44.11
                           59.66
                           7
                           480.0
     

     
     
153823
                           emb|CAE36355.1|
                           (BX640426) putative ArsR-family transcriptional regulator [Bordetella parapertussis]
                           247
                           42.91
                           59.91
                           27
                           485.0
     

     






      

          
GC ORFID: 46464How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0279Glimmer Score: 

          
Start: 6128723Stop: 6129421

          
Length: 699


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0279 translation of PA0279Homolog Bit Score 457.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3496 (ORF: BLASTX 231.0), t_PA0279 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATTCAATCCCGGCTTCAGTTCGCTGGCGGCGCTGCTCGCCGATCCCGGTCGCGCGCAGATGATCTGG 
GCACTGATGGATGGCAGCGCCCGCCCGGCCAGCGAGCTGGCGCTGCTGGCAGGCGTTTCGCCGTCCTCCGCC 
AGCGGCCACCTGGGACGGCTGGTCGAGGGCGGCGTGCTGAGCCTGGAGGCGCGCGGGCGCAATCGCTTCTAT 
CGCCTGGCCGGGCCGGAAGTGGGGCAGGCGGTGGAAGCGCTGGCCAGCGCCTCCCTGGCCCTGCAGCCGCAG 
CGGCGCAGCCTGCCGCCGAGCCACGGCACGCCGTCGGCGTTGCGCGAGGCGCGGACCTGCTACGACCACCTG 
GCCGGCGAACTCGCGGTCGGTGTGTTCGCACGGATGCTGGATGCCGGCTGGATCGAGCAGGAGGGCAGGACG 
CTGCGCCTGAGCGCGACCGGCGAGGCCGGGCTGGCCGGGTTGGGGATCGACCTGGCGGAGGTCCGCCGCCGC 
CGTCGGCAGTTCGCCTGCGCCTGCCCCGACTGGAGCGAACGCAAGCCGCACCTCGGCGGCGCGCTGGGGGCG 
GCGTTGCTGGAGGCCTGTCTGCGCCAGGGCTGGTTGCGGCCGCAGGACGGCTCGCGGGCGTTGCAGGTGTCG 
CCGAAGGGCCGCGCGGGACTGCGCGGCCTGGCGGAACGCACGGCGGGCTGA