ViewGene
Locus Name:
GeneID:
Location:

GeneID:3461
TrivialName: PA14_66760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66760
PAO1 Ortholog Locus:PA5052
Sequence Length:696
Protein Length:231
Start: 5963146
Stop: 5963841
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08437.1|AE004918_7 (AE004918) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 230/231 (99%)
Sequence:
ATGGCAAAGAAGAAACCCGCCCCCAAGCGCGGCGCCAGCCGCTACCAGGCGCCCGCCGCGAAGAACGGCGTT
CCCGGCTGGGTCTGGCTGGTCGCCGGCCTGGCCATCGGCGGCTTCATCATGTTCCTGATGAAGCTCGAACCC
GGGCGCAAGGACGTCCAGCGCGAACGCCCGGACGCCCAGCGCCCGGCCGCCGTGCAGGGCAAGCAGCCGCAG
CAGAACGGCCAGGCCCAGCAGCCCGCGCAAACGCAGACGCCGGCCCAGGCCAAGCCGAAGTACGAGTTCTAC
ACCCTGCTGCCGGAGTCCGAGGTCGTGGTGCCGCCGGAAGCGGTACCGGAGAAGGCCCCGCCGTCGCCCACC
CCCGCCGAGCTGGCCAAGGCCGACGAAGCGCGGGCCAAGGCCGCACTCGCCGGGCAGGTGCCACCGCCGCTG
CCGAAAGCGGTGGTCGCCGCTAGCACGCAGTTCTTCCTGCAGGCCGGCTCGTTCCGCAAGCAGTCCGACGCC
GACCGCGTGCGCGCGCAGATCATCCTGCTCGGGCAGTCGGTGAACGTCGAGGCCGGCAACGTCCGCGACGAG
ACCTGGTACCGGGTGATGGTCGGCCCGTTCAACAGCCGCGACCAGTTGTCCCAGGCGCAGAAGACACTGTCC
TCCAACGGCTTCAGCAACCTGCTGTTACAGCAACGCAAGGCCCGCTGA
Translation:
MAKKKPAPKRGASRYQAPAAKNGVPGWVWLVAGLAIGGFIMFLMKLEPGRKDVQRERPDAQRPAAVQGKQPQ
QNGQAQQPAQTQTPAQAKPKYEFYTLLPESEVVVPPEAVPEKAPPSPTPAELAKADEARAKAALAGQVPPPL
PKAVVAASTQFFLQAGSFRKQSDADRVRAQIILLGQSVNVEAGNVRDETWYRVMVGPFNSRDQLSQAQKTLS
SNGFSNLLLQQRKAR*
AnnotationID:3469GeneID:3461
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 18:06:53
Gene Name:
Confidence Code:3
GeneProduct:putative cell division protein
Cell Localization:()
Synonyms:PA5052
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3087
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]
CD-Length = 264 residues,  86.0% aligned
Score =  159 bits (404), Expect = 2e-40
Identities = 68/231 (29%), Positives = 93/231 (40%), Gaps = 5/231 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6925




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34942




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3461_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3461
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5518
                           PA5052_tr
                           translation of PA5052
                           231
                           99.56
                           99.56
                           0
                           1176.0
     

     
     
153818
                           gb|AAG08437.1|AE004918_7
                           (AE004918) hypothetical protein PA5052 [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.56
                           0
                           1176.0
     

     
     
153819
                           gb|AAN70655.1|AE016709_7
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           242
                           64.04
                           76.03
                           21
                           769.0
     

     
     
153820
                           gb|AAO58566.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           243
                           60.49
                           73.25
                           24
                           711.0
     

     






      

          
GC ORFID: 46463How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5052Glimmer Score: 

          
Start: 5226829Stop: 5227524

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5052 translation of PA5052Homolog Bit Score 457.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3788 (ORF: BLASTX 272.0), t_PA5052 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAAAGAAGAAACCCGCCCCCAAGCGCGGCGCCAGCCGCTACCAGGCGCCCGCCGCGAAGAACGGCGTT 
CCCGGCTGGGTCTGGCTGGTCGCCGGCCTGGCCATCGGCGGCTTCATCATGTTCCTGATGAAGCTCGAACCC 
GGGCGCAAGGACGTCCAGCGCGAACGCCCGGACGCCCAGCGCCCGGCCGCCGTGCAGGGCAAGCAGCCGCAG 
CAGAACGGCCAGGCCCAGCAGCCCGCGCAAACGCAGACGCCGGCCCAGGCCAAGCCGAAGTACGAGTTCTAC 
ACCCTGCTGCCGGAGTCCGAGGTCGTGGTGCCGCCGGAAGCGGTACCGGAGAAGGCCCCGCCGTCGCCCACC 
CCCGCCGAGCTGGCCAAGGCCGACGAAGCGCGGGCCAAGGCCGCACTCGCCGGGCAGGTGCCACCGCCGCTG 
CCGAAAGCGGTGGTCGCCGCTAGCACGCAGTTCTTCCTGCAGGCCGGCTCGTTCCGCAAGCAGTCCGACGCC 
GACCGCGTGCGCGCGCAGATCATCCTGCTCGGGCAGTCGGTGAACGTCGAGGCCGGCAACGTCCGCGACGAG 
ACCTGGTACCGGGTGATGGTCGGCCCGTTCAACAGCCGCGACCAGTTGTCCCAGGCGCAGAAGACACTGTCC 
TCCAACGGCTTCAGCAACCTGCTGTTACAGCAACGCAAGGCCCGCTGA