ViewGene

Locus Name:
GeneID:
Location:

GeneID:3460
TrivialName: PA14_66420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66420
PAO1 Ortholog Locus:PA5024
Sequence Length:720
Protein Length:239
Start: 5926208
Stop: 5926927
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08409.1|AE004915_4 (AE004915) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 238/239 (99%), Positives = 238/239 (99%), Gaps = 1/239 (0%)
Sequence:
GTGGCGGTGGGCTTCTTCGCCCAGGTGATCGACGGTGCGCTGGGCATGGCCTATGGCATCACCGCGACTACC
TTCCTGCTCAGCGCTGGTGCCACGCCGGCCGCTGCCAGCGCCAGCGTGCACATCGCCGAAGTGTTCACCACC
GGCTTTTCCGGGATTTCCCACGTCAAGCTCGGCAACGTCAACAAGTCACTCTTCCTCCGCCTGCTGCTGCCG
GGAATGATCGGCGCGGTGCTCGGCGCCGTGCTGATCACCCGCTTCGACGGCCACCAGCTCAAGCCCTTCATC
TCCGCCTACCTGCTGCTGATGGGCCTGTACATCCTGAGCAAGGCCTACCGCCACGTGATCAAGCGCCGGGCA
CCGCGCCACGTGGCCAAGCTGGCACTCTTCGGCGGCTTCGTCGATGCTGCCGGCGGCGGCGGCTGGGGCCCG
GTGGTCACCAGCAGCCTGATCGGCTCGGGTAGCGACCCGCGCACCACCATCGGCTCGGTGAACTTCGCCGAG
TTCTTCCTGACCATCGCCAGCGCCACCTCCTTCATCCTCCTCGCTGGCCAGCCGGACACCTGGAAGATGGTC
GCCGGGCTGGTCTTCGGCGGCCTGTTCGCCGCACCGTTCGCCGCCCTGCTGTGCAAGAAGCTTTCGCCGCGC
ACCCTGCTGGTCATCGTCGGCACCCTGATCACCCTGATCAGCGCCTACAACATCTACATCGGCCTGCGCTGA
Translation:
MAVGFFAQVIDGALGMAYGITATTFLLSAGATPAAASASVHIAEVFTTGFSGISHVKLGNVNKSLFLRLLLP
GMIGAVLGAVLITRFDGHQLKPFISAYLLLMGLYILSKAYRHVIKRRAPRHVAKLALFGGFVDAAGGGGWGP
VVTSSLIGSGSDPRTTIGSVNFAEFFLTIASATSFILLAGQPDTWKMVAGLVFGGLFAAPFAALLCKKLSPR
TLLVIVGTLITLISAYNIYIGLR*
AnnotationID:3468GeneID:3460
AnnotatorUID: diggins
Modification Date/Time: 2004-10-27 13:01:05
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:ytnM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP09997.1| (AE017007) hypothetical Membrane Spanning Protein [Bacillus cereus
           ATCC 14579]
          Length = 300

 Score =  205 bits (521), Expect = 2e-52
 Identities = 110/244 (45%), Positives = 156/244 (63%), Gaps = 12/244 (4%)

>emb|CAB14888.1| (Z99118) ytnM [Bacillus subtilis subsp. subtilis str. 168]
          Length = 300

 Score =  201 bits (511), Expect = 3e-51
 Identities = 106/238 (44%), Positives = 153/238 (64%), Gaps = 9/238 (3%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:14847
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24065
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35041
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3460_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3460

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5517 PA5024_tr translation of PA5024 239 99.58 99.58 1 1177.0
153809 gb|AAG08409.1|AE004915_4 (AE004915) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 239 99.16 99.58 1 1174.0
153810 gb|AAK65934.1| (AE007313) conserved hypothetical protein [Sinorhizobium meliloti] 265 43.77 61.88 33 547.0
153811 gb|AAP09997.1| (AE017007) hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] 303 37.95 51.81 67 531.0
153814 gb|AAP26890.1| (AE017033) membrane protein, putative [Bacillus anthracis str. Ames] 303 37.62 51.15 67 518.0
GC ORFID: 46462How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5024Glimmer Score:
Start: 5189891Stop: 5190610
Length: 720
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5024 translation of PA5024Homolog Bit Score 457.0
Other Homologs: t_PA5024 (ORF: GLIMMER)
GC ORF Sequence
GTGGCGGTGGGCTTCTTCGCCCAGGTGATCGACGGTGCGCTGGGCATGGCCTATGGCATCACCGCGACTACC
TTCCTGCTCAGCGCTGGTGCCACGCCGGCCGCTGCCAGCGCCAGCGTGCACATCGCCGAAGTGTTCACCACC
GGCTTTTCCGGGATTTCCCACGTCAAGCTCGGCAACGTCAACAAGTCACTCTTCCTCCGCCTGCTGCTGCCG
GGAATGATCGGCGCGGTGCTCGGCGCCGTGCTGATCACCCGCTTCGACGGCCACCAGCTCAAGCCCTTCATC
TCCGCCTACCTGCTGCTGATGGGCCTGTACATCCTGAGCAAGGCCTACCGCCACGTGATCAAGCGCCGGGCA
CCGCGCCACGTGGCCAAGCTGGCACTCTTCGGCGGCTTCGTCGATGCTGCCGGCGGCGGCGGCTGGGGCCCG
GTGGTCACCAGCAGCCTGATCGGCTCGGGTAGCGACCCGCGCACCACCATCGGCTCGGTGAACTTCGCCGAG
TTCTTCCTGACCATCGCCAGCGCCACCTCCTTCATCCTCCTCGCTGGCCAGCCGGACACCTGGAAGATGGTC
GCCGGGCTGGTCTTCGGCGGCCTGTTCGCCGCACCGTTCGCCGCCCTGCTGTGCAAGAAGCTTTCGCCGCGC
ACCCTGCTGGTCATCGTCGGCACCCTGATCACCCTGATCAGCGCCTACAACATCTACATCGGCCTGCGCTGA