ViewGene

Locus Name:
GeneID:
Location:

GeneID:346
TrivialName: PA14_48340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48340
PAO1 Ortholog Locus:PA1232
Sequence Length:2040
Protein Length:679
Start: 4301961
Stop: 4299922
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04621.1|AE004552_11 (AE004552) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 674/679 (99%), Positives = 674/679 (99%)
Sequence:
ATGGCGGCGTCGGCGTCCGGCGGGCGCGATTGGTACGCGGCGTTGCCGTTGCCCTGGCGGACCGACAGCCTG
GGCTACGTGCTGCGCAGCATCGGCGCTGCCGCTCTGGCGCTCGGCCTGGGGCTCTACCTGCAACTGGATTCG
CCGTTTTCCGCGGCGTCCACTGTGCTGTTGCTGATCAATCCGGTGCAGGGAGCGGTGGTCGGCAAGGGCTGG
TGGCGCGCCGTGGGTACCCTGGTCGGCACGCTCGCTGCCTTCGTCCTGACCGCGCTGTTCGCCCAGAAGATG
CTGCTGTTCGTCGTCGCCCTGGGTTTCTGGCTGGGTCTCTGCGTCGGCGTCATGAGCCTGGTCCGGCACTTC
TACGCCACTGCCGCGGTGGTCGCCGGCTACACCGTGTGCCTGGCGCTGGGACCGGCCATGGTCGAGCCCGAG
GCGGCCTTCGAGCACATCGTCACCCGCGCCTCGGCGGTAATCGTCGGGGTCTGCTGCCTGAGCTTGGTGACC
GTGCTCTTCAGCCGCAGGACCGTGTCCGGGCGGGTGCGCCAGCGTCTCGTCTCGCTCTGCGCGGCGACGCTG
GCGCTGGTCGCTGCGCGGCATGCCGGTGCGGCTGACGGGGAACTGGAGCGCCGTCGCCGGACGCTGGCCGGC
GAGGTCTACGCGGTAGACGACCTGCTGGGCGTCGGTCGCGCCGAGTCGCGGGCGCTGAGCGCTGCGCTCCCG
GCGATCCGCGGTGGCCTGGCGGCGCTGTTTTCCACGCTGATGGAGTTCCGCTTCGCCGGCGAGACGCATTGG
GCCCGGCGCTTGGCGGAGCGTGGACTGGCGCTGCCGATGGCCGACGACCTGTGCCTGCTGGGCGGCCAACTG
GAGCGCGGCGAGCTCGACTTCGCCGGCGCCGCGCGACGGCTCGCGAGCTTGCGCGGTCGCCTGGCGGCGATT
CGGCGCGGACTTCCGACAGACCAAGCGGATGCCTGTCGCGAAGGGCTGTTCATGGAGCGTCTCGACGAGCAA
CTGGATGACCTGCAGGCCGCCCTGCGGGGGTTCGCCCGGCTCGACGGCCGGGCCCGCGCCGACGTCCGCCCA
GCGGCCTTCCATCGACATTACCGCGAGGCCTTGCGCAACGGCGCGCGAGCCTGGCTGGCGATGCTGGTCGGC
GGCGCCCTGTGGTTCCTCAGCGGGTGGGACCAGGGGCCGACCCTGCTGGCGGTGCTCGGCCCCTACTGCACG
CTGCTGGCAGCCTCGCCCTTTCCCGCCGAGGGCACGCGCAATTTCATTCGCGGCACGCTCTACGCGATACCT
GCCGCATTGCTCTGCAAATTCCTTCTGCTACCGCTGATCAACGGTTTTCCATTGCTGCTGCTGTGCCTCGCC
TTCTTCTGGTCGTTCGGTATCCAGGCCACCACAGTGCCCAGGCGGGCGTTGCAGGGAATCGCCTACCTGATC
GCCTTCAACACCCTGGTCGCCACCGGCAATCTCGCCCGCTTCGATTTCGGCGACTTCGCCAACCAGTCCTGC
GCCTGGGTGCTGGCGCTCTGCATCAGCCTGCTGGTCTACCGCCTGCTGCCGAAGGACCTGGAACGGCATTCG
GCGTCGCTGCTCGACCATCTGCGCCGCGAGACCCTAGCCTTGCTGCGTCGTCGCGCCGGTTTCGACGCGCAT
GCCTGGCAGGCCCGCCAGCAGCATCGCATCGCCCAGCTGGGCGCGTTGCATGGCATGGAACATCCGCGCAGC
GCGCTGGCCCTGCGCCTGGGCTTCGTATCCCTGCAACTCGGCCGCGAGTCGCGGCGCCTGTGGCGCGCCCTG
GCCGGGCTCGACCCGGCCGCCGCGGAGGCGCGGTGGATCGAGTGCGCACTGCGAGCCATCGCCGTCCGCCAT
CGCGATCCGCCGCTCGCCGCGCGGCACGCACGCCGTGCCGGCGCTCGCCTGGCGGCCGCCGGCGAATGGCGC
CTGGCCGCGATCCTCACCGACCTCGCCTGGTTGCTCCGGGCCTATTCGCAAAGCGTCTCGTCCGACGGGGCG
CAGCATGGAGAAAAGACCTCATGA
Translation:
MAASASGGRDWYAALPLPWRTDSLGYVLRSIGAAALALGLGLYLQLDSPFSAASTVLLLINPVQGAVVGKGW
WRAVGTLVGTLAAFVLTALFAQKMLLFVVALGFWLGLCVGVMSLVRHFYATAAVVAGYTVCLALGPAMVEPE
AAFEHIVTRASAVIVGVCCLSLVTVLFSRRTVSGRVRQRLVSLCAATLALVAARHAGAADGELERRRRTLAG
EVYAVDDLLGVGRAESRALSAALPAIRGGLAALFSTLMEFRFAGETHWARRLAERGLALPMADDLCLLGGQL
ERGELDFAGAARRLASLRGRLAAIRRGLPTDQADACREGLFMERLDEQLDDLQAALRGFARLDGRARADVRP
AAFHRHYREALRNGARAWLAMLVGGALWFLSGWDQGPTLLAVLGPYCTLLAASPFPAEGTRNFIRGTLYAIP
AALLCKFLLLPLINGFPLLLLCLAFFWSFGIQATTVPRRALQGIAYLIAFNTLVATGNLARFDFGDFANQSC
AWVLALCISLLVYRLLPKDLERHSASLLDHLRRETLALLRRRAGFDAHAWQARQQHRIAQLGALHGMEHPRS
ALALRLGFVSLQLGRESRRLWRALAGLDPAAAEARWIECALRAIAVRHRDPPLAARHARRAGARLAAAGEWR
LAAILTDLAWLLRAYSQSVSSDGAQHGEKTS*
AnnotationID:355GeneID:346
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:46
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1232
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1289,pfam04632
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1289, COG1289, Predicted membrane protein.
CD-Length = 674 residues,  98.7% aligned
Score =  265 bits (679), Expect = 1e-71
Identities = 207/678 (30%), Positives = 273/678 (40%), Gaps = 20/678 (2%)

pfam04632, FUSC, Fusaric acid resistance protein conserved region.
CD-Length = 119 residues, 100.0% aligned
Score =  118 bits (297), Expect = 2e-27
Identities = 56/119 (47%), Positives = 68/119 (57%)
Genomic Context:
Comment:
ReferenceID:695
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17837
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37532
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:346_cdd.html
URL:
Homologs By Global Alignment
Gene ID:346

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
577 PA1232_tr translation of PA1232 679 99.26 99.26 0 3412.0
27801 gb|AAG04621.1|AE004552_11 (AE004552) hypothetical protein PA1232 [Pseudomonas aeruginosa PAO1] 679 99.26 99.26 0 3412.0
GC ORFID: 43348How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1232Glimmer Score:
Start: 651947Stop: 653986
Length: 2040
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1232 translation of PA1232Homolog Bit Score 1318.0
Other Homologs: t_PA1232 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGGCGTCGGCGTCCGGCGGGCGCGATTGGTACGCGGCGTTGCCGTTGCCCTGGCGGACCGACAGCCTG
GGCTACGTGCTGCGCAGCATCGGCGCTGCCGCTCTGGCGCTCGGCCTGGGGCTCTACCTGCAACTGGATTCG
CCGTTTTCCGCGGCGTCCACTGTGCTGTTGCTGATCAATCCGGTGCAGGGAGCGGTGGTCGGCAAGGGCTGG
TGGCGCGCCGTGGGTACCCTGGTCGGCACGCTCGCTGCCTTCGTCCTGACCGCGCTGTTCGCCCAGAAGATG
CTGCTGTTCGTCGTCGCCCTGGGTTTCTGGCTGGGTCTCTGCGTCGGCGTCATGAGCCTGGTCCGGCACTTC
TACGCCACTGCCGCGGTGGTCGCCGGCTACACCGTGTGCCTGGCGCTGGGACCGGCCATGGTCGAGCCCGAG
GCGGCCTTCGAGCACATCGTCACCCGCGCCTCGGCGGTAATCGTCGGGGTCTGCTGCCTGAGCTTGGTGACC
GTGCTCTTCAGCCGCAGGACCGTGTCCGGGCGGGTGCGCCAGCGTCTCGTCTCGCTCTGCGCGGCGACGCTG
GCGCTGGTCGCTGCGCGGCATGCCGGTGCGGCTGACGGGGAACTGGAGCGCCGTCGCCGGACGCTGGCCGGC
GAGGTCTACGCGGTAGACGACCTGCTGGGCGTCGGTCGCGCCGAGTCGCGGGCGCTGAGCGCTGCGCTCCCG
GCGATCCGCGGTGGCCTGGCGGCGCTGTTTTCCACGCTGATGGAGTTCCGCTTCGCCGGCGAGACGCATTGG
GCCCGGCGCTTGGCGGAGCGTGGACTGGCGCTGCCGATGGCCGACGACCTGTGCCTGCTGGGCGGCCAACTG
GAGCGCGGCGAGCTCGACTTCGCCGGCGCCGCGCGACGGCTCGCGAGCTTGCGCGGTCGCCTGGCGGCGATT
CGGCGCGGACTTCCGACAGACCAAGCGGATGCCTGTCGCGAAGGGCTGTTCATGGAGCGTCTCGACGAGCAA
CTGGATGACCTGCAGGCCGCCCTGCGGGGGTTCGCCCGGCTCGACGGCCGGGCCCGCGCCGACGTCCGCCCA
GCGGCCTTCCATCGACATTACCGCGAGGCCTTGCGCAACGGCGCGCGAGCCTGGCTGGCGATGCTGGTCGGC
GGCGCCCTGTGGTTCCTCAGCGGGTGGGACCAGGGGCCGACCCTGCTGGCGGTGCTCGGCCCCTACTGCACG
CTGCTGGCAGCCTCGCCCTTTCCCGCCGAGGGCACGCGCAATTTCATTCGCGGCACGCTCTACGCGATACCT
GCCGCATTGCTCTGCAAATTCCTTCTGCTACCGCTGATCAACGGTTTTCCATTGCTGCTGCTGTGCCTCGCC
TTCTTCTGGTCGTTCGGTATCCAGGCCACCACAGTGCCCAGGCGGGCGTTGCAGGGAATCGCCTACCTGATC
GCCTTCAACACCCTGGTCGCCACCGGCAATCTCGCCCGCTTCGATTTCGGCGACTTCGCCAACCAGTCCTGC
GCCTGGGTGCTGGCGCTCTGCATCAGCCTGCTGGTCTACCGCCTGCTGCCGAAGGACCTGGAACGGCATTCG
GCGTCGCTGCTCGACCATCTGCGCCGCGAGACCCTAGCCTTGCTGCGTCGTCGCGCCGGTTTCGACGCGCAT
GCCTGGCAGGCCCGCCAGCAGCATCGCATCGCCCAGCTGGGCGCGTTGCATGGCATGGAACATCCGCGCAGC
GCGCTGGCCCTGCGCCTGGGCTTCGTATCCCTGCAACTCGGCCGCGAGTCGCGGCGCCTGTGGCGCGCCCTG
GCCGGGCTCGACCCGGCCGCCGCGGAGGCGCGGTGGATCGAGTGCGCACTGCGAGCCATCGCCGTCCGCCAT
CGCGATCCGCCGCTCGCCGCGCGGCACGCACGCCGTGCCGGCGCTCGCCTGGCGGCCGCCGGCGAATGGCGC
CTGGCCGCGATCCTCACCGACCTCGCCTGGTTGCTCCGGGCCTATTCGCAAAGCGTCTCGTCCGACGGGGCG
CAGCATGGAGAAAAGACCTCATGA