ViewGene
Locus Name:
GeneID:
Location:

GeneID:3459
TrivialName: PA14_16200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16200
PAO1 Ortholog Locus:PA3727
Sequence Length:693
Protein Length:230
Start: 1384137
Stop: 1384829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07114.1|AE004791_11 (AE004791) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/230 (99%), Positives = 229/230 (99%)
Sequence:
ATGGACTTCGACGGATTGGACCGCCAGCTGCGCGACAGCCTGGCCGACCTGAAGCTGAGCAACGAGGAACGG
GACGAACTGCGCCAACTGGGCAGCGAGCTGGCGCCCGACCAGGTGCGTTTCCTGCGCAACCGTGCCTTCGAC
CTGGTGCGTGAGCTGGTCCTCGTGGAGGAGCAGGGCGAACGGATAGCCGCCCTGAAGTGGCTGGAGCAGGTG
GTGCGCACCCtggaggttACCGCGGCGGCGCCGCGCAGCCGCGCCAGCGCCTATTTCAGTCCCGGCGAGGAG
TGTCGGCGGAAGATCCGCGAACTGTGCCGGCAGGCCAGGCAGAGCCTGGACATCTGCGTGTTCACCATCTCC
GACGACCAGCTCAGTGCGGAAATCCTGGCCTGCCATCGGCGCGGTGTTCCGGTGCGGATCATCAGCGACGAT
GACAAGCAGTTCGACGAAGGCAGCGACATCCATGCGCTGCGCGAGGCCGGCGTGCCGCTGCGAATCGACGAC
AGTCCCTTCCACATGCACCACAAGTTCGCCCTGGTGGATGGCGCCTGGCTGCTCAACGGCAGTTTCAACTGG
ACCCGCAGCGCCAGCGTCAACAACGAAGAGAACCTGCTGGTAACCGACGACGCCGTGCTGATCGGCGCCTAT
CGGCGCGAATTCGAGGAACTCTGGGGCCGCTACGCCCCGCGCTGA
Translation:
MDFDGLDRQLRDSLADLKLSNEERDELRQLGSELAPDQVRFLRNRAFDLVRELVLVEEQGERIAALKWLEQV
VRTLEVTAAAPRSRASAYFSPGEECRRKIRELCRQARQSLDICVFTISDDQLSAEILACHRRGVPVRIISDD
DKQFDEGSDIHALREAGVPLRIDDSPFHMHHKFALVDGAWLLNGSFNWTRSASVNNEENLLVTDDAVLIGAY
RREFEELWGRYAPR*
AnnotationID:3467GeneID:3459
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3727
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31828




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3459_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3459
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5516
                           PA3727_tr
                           translation of PA3727
                           230
                           99.13
                           99.56
                           0
                           1177.0
     

     
     
153808
                           gb|AAG07114.1|AE004791_11
                           (AE004791) hypothetical protein PA3727 [Pseudomonas aeruginosa PAO1]
                           230
                           99.13
                           99.56
                           0
                           1177.0
     

     






      

          
GC ORFID: 46461How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3727Glimmer Score: 

          
Start: 3569800Stop: 3569108

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3727 translation of PA3727Homolog Bit Score 457.0

          
Other Homologs:  t_PA3727 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTTCGACGGATTGGACCGCCAGCTGCGCGACAGCCTGGCCGACCTGAAGCTGAGCAACGAGGAACGG 
GACGAACTGCGCCAACTGGGCAGCGAGCTGGCGCCCGACCAGGTGCGTTTCCTGCGCAACCGTGCCTTCGAC 
CTGGTGCGTGAGCTGGTCCTCGTGGAGGAGCAGGGCGAACGGATAGCCGCCCTGAAGTGGCTGGAGCAGGTG 
GTGCGCACCCtggaggttACCGCGGCGGCGCCGCGCAGCCGCGCCAGCGCCTATTTCAGTCCCGGCGAGGAG 
TGTCGGCGGAAGATCCGCGAACTGTGCCGGCAGGCCAGGCAGAGCCTGGACATCTGCGTGTTCACCATCTCC 
GACGACCAGCTCAGTGCGGAAATCCTGGCCTGCCATCGGCGCGGTGTTCCGGTGCGGATCATCAGCGACGAT 
GACAAGCAGTTCGACGAAGGCAGCGACATCCATGCGCTGCGCGAGGCCGGCGTGCCGCTGCGAATCGACGAC 
AGTCCCTTCCACATGCACCACAAGTTCGCCCTGGTGGATGGCGCCTGGCTGCTCAACGGCAGTTTCAACTGG 
ACCCGCAGCGCCAGCGTCAACAACGAAGAGAACCTGCTGGTAACCGACGACGCCGTGCTGATCGGCGCCTAT 
CGGCGCGAATTCGAGGAACTCTGGGGCCGCTACGCCCCGCGCTGA