ViewGene

Locus Name:
GeneID:
Location:

GeneID:3458
TrivialName: PA14_23210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23210
PAO1 Ortholog Locus:PA3172
Sequence Length:681
Protein Length:226
Start: 2011151
Stop: 2010471
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06560.1|AE004741_5 (AE004741) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 226/226 (100%)
Sequence:
GTGAAGCGCATGCGGCTCAAAGCGGTACTGTTCGACATGGATGGCACCCTGCTCGACACGGCGCCGGACTTC
ATCGCCATCACCCAGGCCATGCGTGCCGCCCACGGCCTGCCGCCGGTGGACGAGCAACGGGTGCGCGACGTG
GTCTCCGGCGGCGCGCGCGCGATGGTTGCCGCGGCCTTCGGCCTGTCGCTGGACAGCCCGGAACTGGAACCC
CTGCGCCAGGAGTTCCTCGACCGCTACCAGGAGCATTGCGCGGTTCTCAGCCGGCCCTACGACGGCATCCCC
GAACTGCTTGCGGCGATCGAGAAAGCCGGGTTGATCTGGGGCGTGGTGACCAACAAGCCGGTGCGCTTCGCC
GAACCGATCATGCAGCGCCTGGGCTACGCCGAGCGTTCCAGGGTGCTGGTCTGCCCGGACCACGTGACCCGC
AGCAAGCCCGATCCCGAGCCGCTGCTACTGGCCTGTAGCCAGCTCGGCATCGATCCGTCGAGGGTGCTGTTC
ATCGGCGACGACCTGCGCGACATCGAATCCGGCCGCGACGCCGGAACCAAGACCGCGGCGGTGCGCTACGGC
TACATCCACCCCGAAGACAACCCCGCGCACTGGGGCGCCGACGTGATCGTCGACCACCCGCGCGAACTCATC
GACGTTCTCGACCGCGCGCTCTGCGACTGCTGA
Translation:
MKRMRLKAVLFDMDGTLLDTAPDFIAITQAMRAAHGLPPVDEQRVRDVVSGGARAMVAAAFGLSLDSPELEP
LRQEFLDRYQEHCAVLSRPYDGIPELLAAIEKAGLIWGVVTNKPVRFAEPIMQRLGYAERSRVLVCPDHVTR
SKPDPEPLLLACSQLGIDPSRVLFIGDDLRDIESGRDAGTKTAAVRYGYIHPEDNPAHWGADVIVDHPRELI
DVLDRALCDC*
AnnotationID:3466GeneID:3458
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoglycolate phosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative hydrolase
Functional Category Confidence Code:5
COGs:pfam00702,COG0546,COG0637
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55261.1| (AE016862) phosphoglycolate phosphatase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 223

 Score =  341 bits (875), Expect = 2e-93
 Identities = 164/223 (73%), Positives = 188/223 (84%)

>gb|AAN67384.1|AE016364_9 (AE016780) hydrolase, haloacid dehalogenase-like family
           [Pseudomonas putida KT2440]
          Length = 223

 Score =  332 bits (850), Expect = 1e-90
 Identities = 160/223 (71%), Positives = 184/223 (82%)

Structural Features:
pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.
CD-Length = 197 residues, 100.0% aligned
Score =  100 bits (250), Expect = 1e-22
Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 11/197 (5%)

COG0546, Gph, Predicted phosphatases
CD-Length = 220 residues,  99.5% aligned
Score =  180 bits (458), Expect = 9e-47
Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

COG0637, COG0637, Predicted phosphatase/phosphohexomutase 
CD-Length = 221 residues,  97.7% aligned
Score =  114 bits (285), Expect = 1e-26
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 3/217 (1%)
Genomic Context:
Comment:
ReferenceID:14845
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24061
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32370
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3458_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3458

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5515 PA3172_tr translation of PA3172 226 99.55 99.99 0 1177.0
153796 gb|AAG06560.1|AE004741_5 (AE004741) probable hydrolase [Pseudomonas aeruginosa PAO1] 226 99.11 99.99 0 1174.0
153797 gb|AAO55261.1| (AE016862) phosphoglycolate phosphatase [Pseudomonas syringae pv. tomato str. DC3000] 226 72.56 83.18 3 875.0
153798 gb|AAN67384.1|AE016364_9 (AE016780) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440] 226 70.79 81.41 3 850.0
153799 gb|AAQ60760.1| (AE016921) probable phosphoglycolate phosphatase [Chromobacterium violaceum ATCC 12472] 226 41.59 60.17 11 488.0
GC ORFID: 46460How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3172Glimmer Score:
Start: 2942780Stop: 2943460
Length: 681
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3172 translation of PA3172Homolog Bit Score 457.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7690 (ORF: BLASTX 340.0), t_PA3172 (ORF: GLIMMER)
GC ORF Sequence
GTGAAGCGCATGCGGCTCAAAGCGGTACTGTTCGACATGGATGGCACCCTGCTCGACACGGCGCCGGACTTC
ATCGCCATCACCCAGGCCATGCGTGCCGCCCACGGCCTGCCGCCGGTGGACGAGCAACGGGTGCGCGACGTG
GTCTCCGGCGGCGCGCGCGCGATGGTTGCCGCGGCCTTCGGCCTGTCGCTGGACAGCCCGGAACTGGAACCC
CTGCGCCAGGAGTTCCTCGACCGCTACCAGGAGCATTGCGCGGTTCTCAGCCGGCCCTACGACGGCATCCCC
GAACTGCTTGCGGCGATCGAGAAAGCCGGGTTGATCTGGGGCGTGGTGACCAACAAGCCGGTGCGCTTCGCC
GAACCGATCATGCAGCGCCTGGGCTACGCCGAGCGTTCCAGGGTGCTGGTCTGCCCGGACCACGTGACCCGC
AGCAAGCCCGATCCCGAGCCGCTGCTACTGGCCTGTAGCCAGCTCGGCATCGATCCGTCGAGGGTGCTGTTC
ATCGGCGACGACCTGCGCGACATCGAATCCGGCCGCGACGCCGGAACCAAGACCGCGGCGGTGCGCTACGGC
TACATCCACCCCGAAGACAACCCCGCGCACTGGGGCGCCGACGTGATCGTCGACCACCCGCGCGAACTCATC
GACGTTCTCGACCGCGCGCTCTGCGACTGCTGA