ViewGene
Locus Name:
GeneID:
Location:

GeneID:3457
TrivialName: PA14_50460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50460
PAO1 Ortholog Locus:PA1079
Sequence Length:714
Protein Length:237
Start: 4484786
Stop: 4484073
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04468.1|AE004539_10 (AE004539) flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PAO1]
Identities = 236/237 (99%), Positives = 236/237 (99%)
Sequence:
ATGAGCATCGATAACGTCAGCGGCACCAGCAGCAACACCGGCAACGTCAACGGCAGCAATCGCGCCGCCGGC
AGCGGCGCCACCGAGACCGGGCAGAGCGTCAAGGGCAGCAGCAACCTGGGCAAGGACGAATTCCTCAAGCTG
CTGGTGGCCCAGTTGAAGAACCAGGACCCGATGTCGCCGCAGCAGAACGGCGAGTTCATCGCCCAACTGGCC
CAGTTCAGCACCGTGGAAGGCGTGCAGTCGCTGAACAAGAGCATGGAGAGCATTCTCTCCAACTACCAGTCG
TCGCAGGCCCTGCAAGCCTCGTCGCTGGTGGGGCGCAAGGTCATCGTGGCGACCGACAAGTCGGTGGTGGAC
ACCAAGGACACCTTCAAGGCGTCCCTCAACCTGCCGGTTTCCAGCAGCAACGTCTGGGTCAACGTCTACGAC
GACAAGGGCACCGTGGTCAATCGCATCAACCTCGGCCAGCAGGCTGCCGGCAGCGTCAGCTTCATGTGGGAC
GGCAAGGACAGCAGCGGCAACATCATGCCGCCGGGCACCTACAAGTTCGAGGCGCAGACCTCGATCGACGGC
AAGACCTATGGGCTCCAGACCTACCTGCCGGCCAACGTCGACAGCGTCACCCTGGGGCAGAACGGCGGCGAG
CTGATGCTCAACCTCGCAGGCCTGGGCAGCATCGCGCTGTCCAAAGTACAGATCATCGGCCAGTAA
Translation:
MSIDNVSGTSSNTGNVNGSNRAAGSGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLA
QFSTVEGVQSLNKSMESILSNYQSSQALQASSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYD
DKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQNGGE
LMLNLAGLGSIALSKVQIIGQ*
AnnotationID:3465GeneID:3457
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:09
Gene Name:flgD
Confidence Code:2
GeneProduct:flagellar basal-body rod modification protein FlgD
Cell Localization:()
Synonyms:PA1079
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:flagellar hook cap (scaffold) 
Functional Category Confidence Code:5
COGs:COG1843, pfam03963
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1843, FlgD, Flagellar hook capping protein [Cell motility and secretion]
             CD-Length = 222 residues, 100.0% aligned
             Score =  170 bits (432), Expect = 1e-43
pfam03963, FlgD, Flagellar hook capping protein. Score: 121, 7e-29






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL






   
Comment:


















    ReferenceID:6917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3457
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5514
                           PA1079_tr
                           translation of PA1079
                           237
                           99.57
                           99.57
                           0
                           1175.0
     

     
     
153790
                           gb|AAG04468.1|AE004539_10
                           (AE004539) flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PAO1]
                           237
                           99.57
                           99.57
                           0
                           1175.0
     

     
     
153791
                           gb|AAN69967.1|AE016635_3
                           (AE016790) flagellar basal-body rod modification protein FlgD [Pseudomonas putida KT2440]
                           239
                           50.62
                           67.36
                           8
                           578.0
     

     
     
153792
                           gb|AAO55453.1|
                           (AE016862) basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000]
                           237
                           49.78
                           67.51
                           8
                           555.0
     

     
     
153794
                           gb|AAD42914.1|U12817_8
                           (U12817) polar flagellar FlgD homolog [Vibrio parahaemolyticus]
                           246
                           38.21
                           55.69
                           20
                           393.0
     

     






      

          
GC ORFID: 46459How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1079Glimmer Score: 

          
Start: 469122Stop: 469835

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1079 translation of PA1079Homolog Bit Score 457.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7892 (ORF: BLASTX 215.0), t_PA1079 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCGATAACGTCAGCGGCACCAGCAGCAACACCGGCAACGTCAACGGCAGCAATCGCGCCGCCGGC 
AGCGGCGCCACCGAGACCGGGCAGAGCGTCAAGGGCAGCAGCAACCTGGGCAAGGACGAATTCCTCAAGCTG 
CTGGTGGCCCAGTTGAAGAACCAGGACCCGATGTCGCCGCAGCAGAACGGCGAGTTCATCGCCCAACTGGCC 
CAGTTCAGCACCGTGGAAGGCGTGCAGTCGCTGAACAAGAGCATGGAGAGCATTCTCTCCAACTACCAGTCG 
TCGCAGGCCCTGCAAGCCTCGTCGCTGGTGGGGCGCAAGGTCATCGTGGCGACCGACAAGTCGGTGGTGGAC 
ACCAAGGACACCTTCAAGGCGTCCCTCAACCTGCCGGTTTCCAGCAGCAACGTCTGGGTCAACGTCTACGAC 
GACAAGGGCACCGTGGTCAATCGCATCAACCTCGGCCAGCAGGCTGCCGGCAGCGTCAGCTTCATGTGGGAC 
GGCAAGGACAGCAGCGGCAACATCATGCCGCCGGGCACCTACAAGTTCGAGGCGCAGACCTCGATCGACGGC 
AAGACCTATGGGCTCCAGACCTACCTGCCGGCCAACGTCGACAGCGTCACCCTGGGGCAGAACGGCGGCGAG 
CTGATGCTCAACCTCGCAGGCCTGGGCAGCATCGCGCTGTCCAAAGTACAGATCATCGGCCAGTAA