ViewGene
Locus Name:
GeneID:
Location:

GeneID:3456
TrivialName: PA14_59610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59610
PAO1 Ortholog Locus:
Sequence Length:675
Protein Length:224
Start: 5304920
Stop: 5304246
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84181.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGACCCAAGCTGCGAAAATACCAGCAAATGAGTACTCATTGGGGGATGGAAGAGGCTACATCAATATCTGG
CCGGAAAAGGATGAGGCTCAGGCATTTCTTATCCATAATGATGGGCCTAATGGGGCTACATGCAGCCTTAAA
GGCACTCTTAGAGATAATAAAGGAGTGGTGCATTCGCCGTATTCCTCTGCTTCATGTTTGCTAAGTATCACC
CAGACAGGGCTGCTGTCAGTAAGCGTCAAACGTGAGGAAAATTCGCCAAGCTGCTCTGCATGGTGCGGTCCT
AGAGTTTGGTTTGAAGGAGCCTATAGCGTCCCGCCCAAGGGCTGCTACTATATGCAAATAAGGAAAAAAACT
CGACAAATGTTGGGTATGATTGAGAAAAAAGAGCTTGATGCCGCTCGCGCCTTATCAAATAAGCTTTTGTCA
GACTGCGCAACCGAGCTAGCCTATCCTGCCAAGATATACTTGACGAACACACTTGCCATGATCAGTGCTGAA
AAGGGAGAGAATGCTCGCTGTTTGGAGTATGCCCATCGGGTGCAAAAGCAAATTCCTGTAAGAGATGACGGC
CAACCGGCTGAAGACTTGCTCCCGGCGGAGCACGCTTTCGCTATGGAACAACGCGCCAAGGCTGATGCTCTG
TCTGAGCGATGCAGCGACGAGAAATAA
Translation:
MTQAAKIPANEYSLGDGRGYINIWPEKDEAQAFLIHNDGPNGATCSLKGTLRDNKGVVHSPYSSASCLLSIT
QTGLLSVSVKREENSPSCSAWCGPRVWFEGAYSVPPKGCYYMQIRKKTRQMLGMIEKKELDAARALSNKLLS
DCATELAYPAKIYLTNTLAMISAEKGENARCLEYAHRVQKQIPVRDDGQPAEDLLPAEHAFAMEQRAKADAL
SERCSDEK*
AnnotationID:3464GeneID:3456
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 19:07:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3456
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
153789
                           gb|AAP84181.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           224
                           99.99
                           99.99
                           0
                           1179.0
     

     






      

          
GC ORFID: 46458How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL056Glimmer Score: 

          
Start: 4568599Stop: 4567925

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL056 224 Homolog: PA2224 / Hypothetical protein / P.aeruginosa / PA01 (AAG05612) translation of RL056Homolog Bit Score 458.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCCAAGCTGCGAAAATACCAGCAAATGAGTACTCATTGGGGGATGGAAGAGGCTACATCAATATCTGG 
CCGGAAAAGGATGAGGCTCAGGCATTTCTTATCCATAATGATGGGCCTAATGGGGCTACATGCAGCCTTAAA 
GGCACTCTTAGAGATAATAAAGGAGTGGTGCATTCGCCGTATTCCTCTGCTTCATGTTTGCTAAGTATCACC 
CAGACAGGGCTGCTGTCAGTAAGCGTCAAACGTGAGGAAAATTCGCCAAGCTGCTCTGCATGGTGCGGTCCT 
AGAGTTTGGTTTGAAGGAGCCTATAGCGTCCCGCCCAAGGGCTGCTACTATATGCAAATAAGGAAAAAAACT 
CGACAAATGTTGGGTATGATTGAGAAAAAAGAGCTTGATGCCGCTCGCGCCTTATCAAATAAGCTTTTGTCA 
GACTGCGCAACCGAGCTAGCCTATCCTGCCAAGATATACTTGACGAACACACTTGCCATGATCAGTGCTGAA 
AAGGGAGAGAATGCTCGCTGTTTGGAGTATGCCCATCGGGTGCAAAAGCAAATTCCTGTAAGAGATGACGGC 
CAACCGGCTGAAGACTTGCTCCCGGCGGAGCACGCTTTCGCTATGGAACAACGCGCCAAGGCTGATGCTCTG 
TCTGAGCGATGCAGCGACGAGAAATAA