ViewGene
Locus Name:
GeneID:
Location:

GeneID:3454
TrivialName: PA14_71700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71700
PAO1 Ortholog Locus:PA5433
Sequence Length:675
Protein Length:224
Start: 6387283
Stop: 6387957
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08818.1|AE004956_2 (AE004956) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/224 (97%), Positives = 221/224 (98%)
Sequence:
ATGCGCGAACCCTTGAACTGGCGCCCCGTCGCCACTCCGCCCCACGCCCCGCTCGACGGCCGCTTCGTCAAG
CTCGAACCGCTCGATCCGCAACGCCACGGCGACGACCTGTGGGACGCCCTGCAAGGGCCTGGCGCCGACCCG
CTGCTGTGGGAATACCTGGCCTACGGCCCGTTCGCCGAGCGCACGGCGTTCGACGCCTGGCTGGCCGGCCAG
GCGACCAGCCGCGACCCGCTGTTCTTCGCCGTGCGCGAGCGGCGCACGCAGCGCGCCGTCGGCCTGCTCAGC
TACCTGCGGATCACGCCGAAGGATGGCGTCATCGAAATCGGCCATATCGCCTTCGGCGCGCCGATGCAGCGC
ACACCGGGGTCTACCGAGGCGGTCTACCTGCTCGCCGAGCTCGCCCTCGGCCGCCTCAGCTACCGCCGCCTG
GAGTGGAAGTGCAATGCCGGCAACGCCCGTTCGATGCGCGCCGCCGAGCGCCTGGGCTTCACCTACGAAGGC
ACCTTCCGCCAGCACATGGTGGTCAAGCAGCGCAACCGCGACACCGCCTGGTTCTCCCTGCTCGACAGCGAA
TGGCCGGCGCGACAGGCGGCGTTCGAGCGCTGGCTCGATCCTTCCAACTTCGACGCCGAAGGCCGCCAGCGG
CAGACGCTGGAGGCGCTGCGCGACTAG
Translation:
MREPLNWRPVATPPHAPLDGRFVKLEPLDPQRHGDDLWDALQGPGADPLLWEYLAYGPFAERTAFDAWLAGQ
ATSRDPLFFAVRERRTQRAVGLLSYLRITPKDGVIEIGHIAFGAPMQRTPGSTEAVYLLAELALGRLSYRRL
EWKCNAGNARSMRAAERLGFTYEGTFRQHMVVKQRNRDTAWFSLLDSEWPARQAAFERWLDPSNFDAEGRQR
QTLEALRD*
AnnotationID:3462GeneID:3454
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:52
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA5433
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG1670
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70910.1|AE016735_3 (AE016794) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 223

 Score =  290 bits (742), Expect = 4e-78
 Identities = 138/223 (61%), Positives = 163/223 (73%), Gaps = 2/223 (0%)

>gb|AAO58926.1| (AE016876) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 222

 Score =  261 bits (668), Expect = 2e-69
 Identities = 130/219 (59%), Positives = 153/219 (69%), Gaps = 2/219 (0%)

>emb|CAE32923.1| (BX640444) putative GNAT-family acetyltransferase [Bordetella
           bronchiseptica]
          Length = 236

 Score =  238 bits (608), Expect = 2e-62
 Identities = 119/217 (54%), Positives = 147/217 (67%), Gaps = 1/217 (0%)






 
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  97.3% aligned
Score = 88.1 bits (217), Expect = 7e-19
Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 6/182 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6911




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24053




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34679




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3454_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3454
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5512
                           PA5433_tr
                           translation of PA5433
                           224
                           97.76
                           98.66
                           0
                           1179.0
     

     
     
153728
                           gb|AAG08818.1|AE004956_2
                           (AE004956) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           224
                           97.76
                           98.66
                           0
                           1179.0
     

     
     
153729
                           gb|AAN70910.1|AE016735_3
                           (AE016794) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           227
                           61.67
                           72.68
                           7
                           745.0
     

     
     
153730
                           gb|AAO58926.1|
                           (AE016876) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           225
                           58.22
                           68.88
                           4
                           666.0
     

     
     
153731
                           emb|CAE32923.1|
                           (BX640444) putative GNAT-family acetyltransferase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           237
                           50.63
                           63.29
                           14
                           607.0
     

     






      

          
GC ORFID: 46456How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5433Glimmer Score: 

          
Start: 5650972Stop: 5651646

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5433 translation of PA5433Homolog Bit Score 458.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2914 (ORF: BLASTX 268.0), t_PA5433 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGAACCCTTGAACTGGCGCCCCGTCGCCACTCCGCCCCACGCCCCGCTCGACGGCCGCTTCGTCAAG 
CTCGAACCGCTCGATCCGCAACGCCACGGCGACGACCTGTGGGACGCCCTGCAAGGGCCTGGCGCCGACCCG 
CTGCTGTGGGAATACCTGGCCTACGGCCCGTTCGCCGAGCGCACGGCGTTCGACGCCTGGCTGGCCGGCCAG 
GCGACCAGCCGCGACCCGCTGTTCTTCGCCGTGCGCGAGCGGCGCACGCAGCGCGCCGTCGGCCTGCTCAGC 
TACCTGCGGATCACGCCGAAGGATGGCGTCATCGAAATCGGCCATATCGCCTTCGGCGCGCCGATGCAGCGC 
ACACCGGGGTCTACCGAGGCGGTCTACCTGCTCGCCGAGCTCGCCCTCGGCCGCCTCAGCTACCGCCGCCTG 
GAGTGGAAGTGCAATGCCGGCAACGCCCGTTCGATGCGCGCCGCCGAGCGCCTGGGCTTCACCTACGAAGGC 
ACCTTCCGCCAGCACATGGTGGTCAAGCAGCGCAACCGCGACACCGCCTGGTTCTCCCTGCTCGACAGCGAA 
TGGCCGGCGCGACAGGCGGCGTTCGAGCGCTGGCTCGATCCTTCCAACTTCGACGCCGAAGGCCGCCAGCGG 
CAGACGCTGGAGGCGCTGCGCGACTAG