ViewGene
Locus Name:
GeneID:
Location:

GeneID:3453
TrivialName: PA14_08640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08640
PAO1 Ortholog Locus:PA4278
Sequence Length:705
Protein Length:234
Start: 740095
Stop: 740799
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07666.1|AE004843_8 (AE004843) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/234 (99%), Positives = 234/234 (100%)
Sequence:
ATGCGCTGGTTCTTCCTGTTTCTCCTGGCCCTGAACGTCTTCTACTACGTCTGGCACCAGCAGCAATCCCCG
CTACGGGCCAAGGAAATCGCACCGCTGGAACTCTATAAGGATGGGCAGAAGAACATTCTGCTGTTGGCCGAG
AGCAACCTTGCTTCCAGGGCGCGCTCGGGATCGCAGGTGCCGGCGCCGAGTGTGCCTCCGGCTGCCGAAGAG
TCGATCGCATCCGAGTCGGCCTGTCTCTATCTTGGCGGAGGCGGTGAGGAGGCGGATGCCCGAAGGTTGCAG
CAGCGCCTGCTGGGCCTGGATATCGAGGCGGAGGTCGAGGCCCGTGGGGAGATGAGCGTCGATTACTGGGTC
TATCTTCCTCCGCTAGCCTCGCGGGAGGCTGCGCTTCGTCAGTTGAAGGAGCTTCAGGCGCGCAATATCGAC
AGCTACCTGATTGGCGAGGGAGTGCTGGCCAATGGCATTTCTTTGGGGATGTTTTCCGCGCGGGATTCGGCT
GAAAGTGCGCAGGTGCGTCTCAAGACGGCAGGTTACGAGGCGGAGCTGAAGGAATTGCCCCGCGGGCAGCGT
GATTTCTGGGTAAGGGTGGCCCCCGGCAGCCGGCGCCTGGTGGATGAGCAACTGCTCCAGGAGCTGGCTCGG
GACTTCAAGGGATTGCAGCATCAAATAATGTCGTGCAAAGGTGTTGCATCCCCCTGA
Translation:
MRWFFLFLLALNVFYYVWHQQQSPLRAKEIAPLELYKDGQKNILLLAESNLASRARSGSQVPAPSVPPAAEE
SIASESACLYLGGGGEEADARRLQQRLLGLDIEAEVEARGEMSVDYWVYLPPLASREAALRQLKELQARNID
SYLIGEGVLANGISLGMFSARDSAESAQVRLKTAGYEAELKELPRGQRDFWVRVAPGSRRLVDEQLLQELAR
DFKGLQHQIMSCKGVASP*
AnnotationID:3461GeneID:3453
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4278
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3453
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5511
                           PA4278_tr
                           translation of PA4278
                           234
                           99.57
                           99.99
                           0
                           1179.0
     

     
     
153727
                           gb|AAG07666.1|AE004843_8
                           (AE004843) hypothetical protein PA4278 [Pseudomonas aeruginosa PAO1]
                           234
                           99.57
                           99.99
                           0
                           1179.0
     

     






      

          
GC ORFID: 46455How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4278Glimmer Score: 

          
Start: 4213845Stop: 4213141

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4278 translation of PA4278Homolog Bit Score 458.0

          
Other Homologs:  t_PA4278 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTGGTTCTTCCTGTTTCTCCTGGCCCTGAACGTCTTCTACTACGTCTGGCACCAGCAGCAATCCCCG 
CTACGGGCCAAGGAAATCGCACCGCTGGAACTCTATAAGGATGGGCAGAAGAACATTCTGCTGTTGGCCGAG 
AGCAACCTTGCTTCCAGGGCGCGCTCGGGATCGCAGGTGCCGGCGCCGAGTGTGCCTCCGGCTGCCGAAGAG 
TCGATCGCATCCGAGTCGGCCTGTCTCTATCTTGGCGGAGGCGGTGAGGAGGCGGATGCCCGAAGGTTGCAG 
CAGCGCCTGCTGGGCCTGGATATCGAGGCGGAGGTCGAGGCCCGTGGGGAGATGAGCGTCGATTACTGGGTC 
TATCTTCCTCCGCTAGCCTCGCGGGAGGCTGCGCTTCGTCAGTTGAAGGAGCTTCAGGCGCGCAATATCGAC 
AGCTACCTGATTGGCGAGGGAGTGCTGGCCAATGGCATTTCTTTGGGGATGTTTTCCGCGCGGGATTCGGCT 
GAAAGTGCGCAGGTGCGTCTCAAGACGGCAGGTTACGAGGCGGAGCTGAAGGAATTGCCCCGCGGGCAGCGT 
GATTTCTGGGTAAGGGTGGCCCCCGGCAGCCGGCGCCTGGTGGATGAGCAACTGCTCCAGGAGCTGGCTCGG 
GACTTCAAGGGATTGCAGCATCAAATAATGTCGTGCAAAGGTGTTGCATCCCCCTGA