ViewGene
Locus Name:
GeneID:
Location:

GeneID:3452
TrivialName: PA14_11310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11310
PAO1 Ortholog Locus:PA4064
Sequence Length:705
Protein Length:234
Start: 984525
Stop: 983821
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07451.1|AE004822_11 (AE004822) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 234/234 (100%), Positives = 234/234 (100%)
Sequence:
ATGAGCGCACTGATCACCCTGACCAACCTCGGCTTCGCCTGGCCCGGCCAGGCGGAGTTGCTGGACATTCCC
AGCTTCCATCTCGAACGCGGCGAGAGCCTGTTCCTCAAGGGGCCTTCCGGCAGCGGCAAGACCACCCTGCTC
GGCCTCCTCGGCGGCGTGCAGAAGCCCGGCCGCGGCAGCATCCGCCTGCTCGGCGAGGACCTGGAAAAGCTG
TCCGCCGCGCGCCGCGACCATTTCCGCGTCGACCACACCGGCTACATCTTCCAGCAGTTCAACCTGCTGCCA
TTCCTCTCGGTACGCGAGAACGTCGAGCTGCCCTGTCACTTTTCCGCGTTGCGCCGTCAGCGCGCCCGCGAA
CGCCACGGTAGCCCGGCGCAGGCCGCCAGCCATCTGCTCGGCCAGCTCGGCCTCGGCGGCGAACTGCACGAA
CGCCGCGCCGACAGCCTGTCCATCGGCCAGCAGCAGCGGGTCGCCGCCGCCCGCGCGCTGATCGGCCAGCCG
GAGCTGGTGATCGCCGACGAGCCGACCTCGGCGCTCGACGCCGACAGCCGCGAGGCGTTTCTCCAGTTGCTC
TTCGCCGAATGCCGCGAGGCCGGCGCCAGCCTGCTGTTCGTCAGCCACGACCAGAGCCTGGCCGGGCTGTTC
GACCGCAGCCTGTCCCTTTCCGATCTCAACCGCGCCGCCCGGCCGGCAGGACTCTGA
Translation:
MSALITLTNLGFAWPGQAELLDIPSFHLERGESLFLKGPSGSGKTTLLGLLGGVQKPGRGSIRLLGEDLEKL
SAARRDHFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSALRRQRARERHGSPAQAASHLLGQLGLGGELHE
RRADSLSIGQQQRVAAARALIGQPELVIADEPTSALDADSREAFLQLLFAECREAGASLLFVSHDQSLAGLF
DRSLSLSDLNRAARPAGL*
AnnotationID:3460GeneID:3452
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA4064
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1136,COG4181,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54224.1| (AE016858) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 236

 Score =  347 bits (889), Expect = 4e-95
 Identities = 180/228 (78%), Positives = 199/228 (87%), Gaps = 1/228 (0%)

>gb|AAN66135.1|AE016242_3 (AE016775) ABC efflux transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 236

 Score =  330 bits (845), Expect = 5e-90
 Identities = 175/229 (76%), Positives = 191/229 (83%), Gaps = 1/229 (0%)






 
Structural Features:
COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component 
[Defense mechanisms] 
CD-Length = 226 residues,  96.0% aligned
Score =  221 bits (564), Expect = 7e-59
Identities = 92/224 (41%), Positives = 126/224 (56%), Gaps = 10/224 (4%)

COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, 
ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 228 residues,  88.2% aligned
Score =  158 bits (400), Expect = 7e-40
Identities = 85/200 (42%), Positives = 112/200 (56%), Gaps = 8/200 (4%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  99.5% aligned
Score =  141 bits (356), Expect = 9e-35
Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 14/195 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36815




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3452_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3452
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5508
                           PA4064_tr
                           translation of PA4064
                           234
                           99.99
                           99.99
                           0
                           1178.0
     

     
     
153652
                           gb|AAG07451.1|AE004822_11
                           (AE004822) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           234
                           99.99
                           99.99
                           0
                           1178.0
     

     
     
153653
                           gb|AAO54224.1|
                           (AE016858) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           76.27
                           84.74
                           2
                           885.0
     

     
     
153654
                           gb|AAN66135.1|AE016242_3
                           (AE016775) ABC efflux transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           236
                           74.15
                           80.93
                           2
                           840.0
     

     
     
153655
                           gb|AAF95694.1|
                           (AE004324) ABC transporter, ATP-binding protein, authentic frameshift [Vibrio cholerae O1 biovar eltor str. N16961]
                           244
                           53.27
                           66.80
                           16
                           613.0
     

     






      

          
GC ORFID: 46454How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4064Glimmer Score: 

          
Start: 3969412Stop: 3970116

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4064 translation of PA4064Homolog Bit Score 458.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1332 (ORF: BLASTX 347.0), t_PA2857 (ORF: BLASTX 139.0), t_PA4594 (ORF: BLASTX 133.0), t_PA4064 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCACTGATCACCCTGACCAACCTCGGCTTCGCCTGGCCCGGCCAGGCGGAGTTGCTGGACATTCCC 
AGCTTCCATCTCGAACGCGGCGAGAGCCTGTTCCTCAAGGGGCCTTCCGGCAGCGGCAAGACCACCCTGCTC 
GGCCTCCTCGGCGGCGTGCAGAAGCCCGGCCGCGGCAGCATCCGCCTGCTCGGCGAGGACCTGGAAAAGCTG 
TCCGCCGCGCGCCGCGACCATTTCCGCGTCGACCACACCGGCTACATCTTCCAGCAGTTCAACCTGCTGCCA 
TTCCTCTCGGTACGCGAGAACGTCGAGCTGCCCTGTCACTTTTCCGCGTTGCGCCGTCAGCGCGCCCGCGAA 
CGCCACGGTAGCCCGGCGCAGGCCGCCAGCCATCTGCTCGGCCAGCTCGGCCTCGGCGGCGAACTGCACGAA 
CGCCGCGCCGACAGCCTGTCCATCGGCCAGCAGCAGCGGGTCGCCGCCGCCCGCGCGCTGATCGGCCAGCCG 
GAGCTGGTGATCGCCGACGAGCCGACCTCGGCGCTCGACGCCGACAGCCGCGAGGCGTTTCTCCAGTTGCTC 
TTCGCCGAATGCCGCGAGGCCGGCGCCAGCCTGCTGTTCGTCAGCCACGACCAGAGCCTGGCCGGGCTGTTC 
GACCGCAGCCTGTCCCTTTCCGATCTCAACCGCGCCGCCCGGCCGGCAGGACTCTGA