ViewGene
Locus Name:
GeneID:
Location:

GeneID:3451
TrivialName: PA14_23460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23460
PAO1 Ortholog Locus:
Sequence Length:1017
Protein Length:338
Start: 2040149
Stop: 2041165
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM27717.1|AF498411_14 (AF498411) ORF_14; similar to Glycosyl transferase group 4; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGAACTTCTGGTTTTGGCTTCCCGTAGTTATGGGGCTTTCTTTAGTCTTGACCGGAGGTCTGCGTCGATAC
GCTTTGGCGCGTAGCTTGATGGACGTTCCCAATGCCCGTAGCTCTCACTCGGTACCTACACCCCGTGGGGGG
GGGGTGGCTATCGTTATGAGTTTCCTACTGGTTTTGCTGATTCTGGCGGCCCTTGGTCAAGTGAGCTGGGAC
TATACGTGGGCGTTGCTAGGTGCTGGTATTGGCATTGCGGTTCTTGGCTTTCTAGACGATCATGGCCATATC
GCAGCACGCTGGCGTCTTTTGGGGCACTTCTTGGCAGCAGCGTGGGGCCTATTTTGGATCGGCGGCTTGCCA
CCTTTGACAGTATTTGGCTTTTTTCTGGATCTGGGTTTGTTAGGGAGTGTACTGGCAGCGTTCTATCTGGTG
TGGTTGCTTAATCTATACAACTTCATGGATGGCATTGATGGTATCGCTAGTGTGGAGGCAATTAGTGTTTGT
CTCGGTGGGGCTCTACTTTTCCTGTTCGTCGGAGAGTTTAAGGTAGCACAGGTCACATTGGTACTGGCGGCA
GCAGTTATGGGGTTTCTATTTTGGAATTTCCCGTCGGCTCGAATTTTCATGGGGGATGCGGGAAGTGGTTTC
CTTGGTATCGTTCTAGGTATTCAATCTTTACAGGCAGCTTGGATTGCTCCTCAATTGCTATGGAGCTGGATT
ATTCTGCTCGGCGTGTTCATTGTGGATGCAACCTTCACGCTACTGCGCCGGCTGATACGCGGAGAGAAAGTC
TACGAGGCTCACCGCAGTCATGCCTATCAGTTTGCTTCTCGTCATTATGGACGACATCTCCCGGTTACTCTT
GCTGTATTTGCTATCAATTTCGTATGGTTGCTACCATTTGCAGTACTTGTAGCCCTTGGGAAGCTTGATGGT
TTTTTGGGGGTTTTGTTTTCCTATGTTCCATTGTTGATGCTGGCGATCCGTTATAAGGCTGGTGAGCTGGAA
AGGCTATAG
Translation:
MNFWFWLPVVMGLSLVLTGGLRRYALARSLMDVPNARSSHSVPTPRGGGVAIVMSFLLVLLILAALGQVSWD
YTWALLGAGIGIAVLGFLDDHGHIAARWRLLGHFLAAAWGLFWIGGLPPLTVFGFFLDLGLLGSVLAAFYLV
WLLNLYNFMDGIDGIASVEAISVCLGGALLFLFVGEFKVAQVTLVLAAAVMGFLFWNFPSARIFMGDAGSGF
LGIVLGIQSLQAAWIAPQLLWSWIILLGVFIVDATFTLLRRLIRGEKVYEAHRSHAYQFASRHYGRHLPVTL
AVFAINFVWLLPFAVLVALGKLDGFLGVLFSYVPLLMLAIRYKAGELERL*
AnnotationID:3459GeneID:3451
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 13:01:52
Gene Name:ORF_14
Confidence Code:3
GeneProduct:similar to Glycosyl transferase group 4
Cell Localization:()
Synonyms:orfN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:UDP-N-acetylmuramyl pentapeptide phosphotransferase
Functional Category Confidence Code:5
COGs:pfam00953,COG0472
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|20559954|gb|AAM27717.1|  ORF_14; similar to Glycosyl transferase group 4; potential multiple 
membrane spanning domains. [Pseudomonas aeruginosa]
gi|20559787|gb|AAM27566.1|  ORF_14; similar to Glycosyl transferase group 4; potential multiple 
membrane spanning domains. [Pseudomonas aeruginosa]
     Length=338
     Score =  677 bits (1748),  Expect = 0.0
     Identities = 338/338 (100%), Positives = 338/338 (100%), Gaps = 0/338 (0%)






 
Structural Features:
COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
             CD-Length = 319 residues,  99.4% aligned
             Score =  104 bits (260), Expect = 2e-23

pfam00953, Glycos_transf_4, Glycosyl transferase..
             CD-Length = 171 residues,  87.7% aligned
             Score = 81.8 bits (202), Expect = 1e-16






   
Genomic Context:






   
Comment:
Identical to  found in P. aeruginosa serotypes 010 and 019.



















    ReferenceID:6905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32381




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3451_cdd.html


    		




 
URL:

















    ReferenceID:38222




  
Author/Investigator(s):
        Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa




  
PubMed:
        12057956


MedLine:
        




    
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3451
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
153617
                           gb|AAM27717.1|AF498411_14
                           (AF498411) ORF_14; similar to Glycosyl transferase group 4; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           338
                           99.99
                           99.99
                           0
                           1748.0
     

     
     
153618
                           gb|AAM27566.1|AF498401_14
                           (AF498401) ORF_14; similar to Glycosyl transferase group 4; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           338
                           99.99
                           99.99
                           0
                           1748.0
     

     
     
153619
                           gb|AAO17422.1|
                           (AF540991) glycosyl transferase group 4-like protein [Pseudomonas aeruginosa]
                           346
                           69.65
                           80.05
                           8
                           1266.0
     

     
     
153620
                           gb|AAM27825.1|AF498417_14
                           (AF498417) ORF_14; similar to Glycosyl transferase group 4; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           346
                           69.65
                           80.05
                           8
                           1266.0
     

     
     
153621
                           gb|AAM27633.1|AF498405_12
                           (AF498405) ORF_13; similar to Glycosyl transferase group 4; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           346
                           67.91
                           80.05
                           8
                           1238.0
     

     






      

          
GC ORFID: 46453How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3145Glimmer Score: 

          
Start: 2913782Stop: 2912766

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3145 translation of PA3145Homolog Bit Score 458.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7740 (ORF: BLASTX 436.0)

          
GC ORF Sequence

           
ATGAACTTCTGGTTTTGGCTTCCCGTAGTTATGGGGCTTTCTTTAGTCTTGACCGGAGGTCTGCGTCGATAC 
GCTTTGGCGCGTAGCTTGATGGACGTTCCCAATGCCCGTAGCTCTCACTCGGTACCTACACCCCGTGGGGGG 
GGGGTGGCTATCGTTATGAGTTTCCTACTGGTTTTGCTGATTCTGGCGGCCCTTGGTCAAGTGAGCTGGGAC 
TATACGTGGGCGTTGCTAGGTGCTGGTATTGGCATTGCGGTTCTTGGCTTTCTAGACGATCATGGCCATATC 
GCAGCACGCTGGCGTCTTTTGGGGCACTTCTTGGCAGCAGCGTGGGGCCTATTTTGGATCGGCGGCTTGCCA 
CCTTTGACAGTATTTGGCTTTTTTCTGGATCTGGGTTTGTTAGGGAGTGTACTGGCAGCGTTCTATCTGGTG 
TGGTTGCTTAATCTATACAACTTCATGGATGGCATTGATGGTATCGCTAGTGTGGAGGCAATTAGTGTTTGT 
CTCGGTGGGGCTCTACTTTTCCTGTTCGTCGGAGAGTTTAAGGTAGCACAGGTCACATTGGTACTGGCGGCA 
GCAGTTATGGGGTTTCTATTTTGGAATTTCCCGTCGGCTCGAATTTTCATGGGGGATGCGGGAAGTGGTTTC 
CTTGGTATCGTTCTAGGTATTCAATCTTTACAGGCAGCTTGGATTGCTCCTCAATTGCTATGGAGCTGGATT 
ATTCTGCTCGGCGTGTTCATTGTGGATGCAACCTTCACGCTACTGCGCCGGCTGATACGCGGAGAGAAAGTC 
TACGAGGCTCACCGCAGTCATGCCTATCAGTTTGCTTCTCGTCATTATGGACGACATCTCCCGGTTACTCTT 
GCTGTATTTGCTATCAATTTCGTATGGTTGCTACCATTTGCAGTACTTGTAGCCCTTGGGAAGCTTGATGGT 
TTTTTGGGGGTTTTGTTTTCCTATGTTCCATTGTTGATGCTGGCGATCCGTTATAAGGCTGGTGAGCTGGAA 
AGGCTATAG