ViewGene

Locus Name:
GeneID:
Location:

GeneID:3450
TrivialName: PA14_23980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23980
PAO1 Ortholog Locus:PA3104
Sequence Length:708
Protein Length:235
Start: 2084648
Stop: 2083941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06492.1|AE004734_10 (AE004734) secretion protein XcpP [Pseudomonas aeruginosa PAO1]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
ATGATCCCTCGGCGATCTTCAGACATAACGATAAAGACCAGGAGTGATGTATTGCCTTTCTCCGGCGCCTCT
TCCCGCTGGCTGCAGCGGTACGCCCCGGCCCTTCTGGCTGTTGCCCTGATCATCGCCATGAGCATCAGCCTC
GCCTGGCAGGCGGCCGGCTGGTTGCGCCTGCAACGCAGCCCGGTAGCCGTCGCCGCCTCGCCGGTCAGCCAC
GAGTCGATCCGCAGCGATCCGACCCGCCTGGCGCGCCTCTTCGGCACCAGCGCCCAGGACCCCAACGCCCCG
CCACCGGCCACCAACCTCGACCTGGTGCTCAAGGGCAGCTTCGTCCAGAGCGATCCCAAGCTGTCCAGCGCG
ATCATCCAGCGCCAGGGCGACAAGCCGCACCGCTACGCGGTCGGCGGCGAGATCAGCGACGGCGTGAAGCTG
CACGCGGTCTACCGCGACCGCGTCGAACTGCAGCGCGGCGGGCGCCTGGAAAGCCTGCCCTTCCCGCACCGT
TCCGGGGGACTGCTGGCCAGCGCGGACGACATTACAAGCGAGAACGACTCGATCGAACAACTGCAAAGCCTG
CAGGATGAGAACGCTGCAGCATTGCGCGAGCGCCTGGACGCCTTGCGCCAGCAGATGGAAGCCACGCCCATC
GCAGAACCCGCCGAAGAAGACTCGAGCGAGCCCACGACCACGCCTACGGAAAGCGACTGA
Translation:
MIPRRSSDITIKTRSDVLPFSGASSRWLQRYAPALLAVALIIAMSISLAWQAAGWLRLQRSPVAVAASPVSH
ESIRSDPTRLARLFGTSAQDPNAPPPATNLDLVLKGSFVQSDPKLSSAIIQRQGDKPHRYAVGGEISDGVKL
HAVYRDRVELQRGGRLESLPFPHRSGGLLASADDITSENDSIEQLQSLQDENAAALRERLDALRQQMEATPI
AEPAEEDSSEPTTTPTESD*
AnnotationID:3458GeneID:3450
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:18
Gene Name:xcpP
Confidence Code:1
GeneProduct: secretion protein XcpP
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6903
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24045
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33472
Author/Investigator(s): Gerard-Vincent M, Robert V, Ball G, Bleves S, Michel GP, Lazdunski A, Filloux A.
Title: Identification of XcpP domains that confer functionality and specificity to the Pseudomonas aeruginosa type II secretion apparatus.
PubMed: 12067351
MedLine:
Source:
Mol Microbiol. 2002 Jun;44(6):1651-65.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12067351
ReferenceID:33473
Author/Investigator(s): Bleves S, Gerard-Vincent M, Lazdunski A, Filloux A.
Title: Structure-function analysis of XcpP, a component involved in general secretory pathway-dependent protein secretion in Pseudomonas aeruginosa.
PubMed: 10383969
MedLine:
Source:
J Bacteriol. 1999 Jul;181(13):4012-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10383969
ReferenceID:33474
Author/Investigator(s): Martinez A, Ostrovsky P, Nunn DN.
Title: Identification of an additional member of the secretin superfamily of proteins in Pseudomonas aeruginosa that is able to function in type II protein secretion.
PubMed: 9680212
MedLine:
Source:
Mol Microbiol. 1998 Jun;28(6):1235-46.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680212
ReferenceID:33475
Author/Investigator(s): Akrim M, Bally M, Ball G, Tommassen J, Teerink H, Filloux A, Lazdunski A.
Title: Xcp-mediated protein secretion in Pseudomonas aeruginosa: identification of two additional genes and evidence for regulation of xcp gene expression.
PubMed: 7934833
MedLine:
Source:
Mol Microbiol. 1993 Oct;10(2):431-43.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7934833
Homologs By Global Alignment
Gene ID:3450

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5506 PA3104_tr translation of PA3104 235 99.99 99.99 0 1178.0
153614 gb|AAG06492.1|AE004734_10 (AE004734) secretion protein XcpP [Pseudomonas aeruginosa PAO1] 235 99.99 99.99 0 1178.0
153615 emb|CAA48581.1| (X68594) XcpP [Pseudomonas aeruginosa] 235 99.99 99.99 0 1178.0
153616 gb|AAC83353.1| (AF092918) outer membrane secretion protein P [Pseudomonas alcaligenes] 251 35.05 47.01 54 314.0
GC ORFID: 46452How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3104Glimmer Score:
Start: 2869283Stop: 2869990
Length: 708
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3104 translation of PA3104Homolog Bit Score 458.0
Other Homologs: t_PA3104 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCCTCGGCGATCTTCAGACATAACGATAAAGACCAGGAGTGATGTATTGCCTTTCTCCGGCGCCTCT
TCCCGCTGGCTGCAGCGGTACGCCCCGGCCCTTCTGGCTGTTGCCCTGATCATCGCCATGAGCATCAGCCTC
GCCTGGCAGGCGGCCGGCTGGTTGCGCCTGCAACGCAGCCCGGTAGCCGTCGCCGCCTCGCCGGTCAGCCAC
GAGTCGATCCGCAGCGATCCGACCCGCCTGGCGCGCCTCTTCGGCACCAGCGCCCAGGACCCCAACGCCCCG
CCACCGGCCACCAACCTCGACCTGGTGCTCAAGGGCAGCTTCGTCCAGAGCGATCCCAAGCTGTCCAGCGCG
ATCATCCAGCGCCAGGGCGACAAGCCGCACCGCTACGCGGTCGGCGGCGAGATCAGCGACGGCGTGAAGCTG
CACGCGGTCTACCGCGACCGCGTCGAACTGCAGCGCGGCGGGCGCCTGGAAAGCCTGCCCTTCCCGCACCGT
TCCGGGGGACTGCTGGCCAGCGCGGACGACATTACAAGCGAGAACGACTCGATCGAACAACTGCAAAGCCTG
CAGGATGAGAACGCTGCAGCATTGCGCGAGCGCCTGGACGCCTTGCGCCAGCAGATGGAAGCCACGCCCATC
GCAGAACCCGCCGAAGAAGACTCGAGCGAGCCCACGACCACGCCTACGGAAAGCGACTGA