ViewGene
Locus Name:
GeneID:
Location:

GeneID:3449
TrivialName: PA14_28350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28350
PAO1 Ortholog Locus:PA2764
Sequence Length:696
Protein Length:231
Start: 2450374
Stop: 2449679
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06152.1|AE004704_6 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 230/231 (99%)
Sequence:
ATGAGCAACCTGCCTGCGATCATCCTGGTCCACGGCTTCTGGGGCGGCGCCGCCCACTGGAGCAAGGTCATT
CTCGAACTGAAACGCCTCGGCCACGACAACCTGCATGCCGTCGAACTACCGTTGACCTCGCTGGCGGACGAT
GCCGAGCGGACGCGCAAGATGATCGCGCAGCAACAGGGGCCGGTCCTGCTGGTCGGACACTCCTATGGCGGC
GCGGTGATCACCGAGGCCGGCAACCAGCCGAATGTGGTCGGGCTGGTCTATATCGCCGCCTTCGCCCCCGAC
AGCGGCGAAAGTCCCGGTGGCATCACCCAGGAGCACTTGCCCCTGGCCGCAGCGAACCTGGCGCCGGACAGC
GATGGCTATCTCTGGGTGAAGGCGGACAGGTTCCACGAAAGCTTCTGCCAGGATCTCGCTGCGGACGAAGGG
CTGGTCATGGGCATCACCCAGAAGGCTCCGCTGGCCAGCACTTTTGGCGATGCCATCGGCAGCCCGGCCTGG
AAGAGCAAGCCCTCCTGGTACCAGATTTCCAGCGCCGATCGCATGATTGCGCCGGAGAACCAGGAGCGGATG
GCCGCGCGGATCGCACCGAGGAAGATCGTCACCCTCGATGCCAGCCACGCGTCACTGGCCTCGCGAGCGAAG
GAAGTAGCGGCGCTGATCGACGAGGCCGCCGTGGCCACCGCCCACTAG
Translation:
MSNLPAIILVHGFWGGAAHWSKVILELKRLGHDNLHAVELPLTSLADDAERTRKMIAQQQGPVLLVGHSYGG
AVITEAGNQPNVVGLVYIAAFAPDSGESPGGITQEHLPLAAANLAPDSDGYLWVKADRFHESFCQDLAADEG
LVMGITQKAPLASTFGDAIGSPAWKSKPSWYQISSADRMIAPENQERMAARIAPRKIVTLDASHASLASRAK
EVAALIDEAAVATAH*
AnnotationID:3457GeneID:3449
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2764
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6901




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36274




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3449_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3449
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5505
                           PA2764_tr
                           translation of PA2764
                           231
                           99.56
                           99.56
                           0
                           1179.0
     

     
     
153609
                           gb|AAG06152.1|AE004704_6
                           (AE004704) hypothetical protein PA2764 [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.56
                           0
                           1179.0
     

     
     
153612
                           dbj|BAB49251.1|
                           (AP002998) hypothetical protein [Mesorhizobium loti]
                           235
                           39.57
                           54.46
                           6
                           381.0
     

     
     
153613
                           dbj|BAB48729.1|
                           (AP002997) hypothetical protein [Mesorhizobium loti]
                           270
                           37.77
                           50.74
                           53
                           393.0
     

     
     
153611
                           gb|AAF85601.1|AE003851_32
                           (AE003851) conserved hypothetical protein [Xylella fastidiosa]
                           254
                           36.61
                           52.75
                           26
                           402.0
     

     






      

          
GC ORFID: 46451How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2764Glimmer Score: 

          
Start: 2503552Stop: 2504247

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2764 translation of PA2764Homolog Bit Score 458.0

          
Other Homologs:  t_PA2764 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACCTGCCTGCGATCATCCTGGTCCACGGCTTCTGGGGCGGCGCCGCCCACTGGAGCAAGGTCATT 
CTCGAACTGAAACGCCTCGGCCACGACAACCTGCATGCCGTCGAACTACCGTTGACCTCGCTGGCGGACGAT 
GCCGAGCGGACGCGCAAGATGATCGCGCAGCAACAGGGGCCGGTCCTGCTGGTCGGACACTCCTATGGCGGC 
GCGGTGATCACCGAGGCCGGCAACCAGCCGAATGTGGTCGGGCTGGTCTATATCGCCGCCTTCGCCCCCGAC 
AGCGGCGAAAGTCCCGGTGGCATCACCCAGGAGCACTTGCCCCTGGCCGCAGCGAACCTGGCGCCGGACAGC 
GATGGCTATCTCTGGGTGAAGGCGGACAGGTTCCACGAAAGCTTCTGCCAGGATCTCGCTGCGGACGAAGGG 
CTGGTCATGGGCATCACCCAGAAGGCTCCGCTGGCCAGCACTTTTGGCGATGCCATCGGCAGCCCGGCCTGG 
AAGAGCAAGCCCTCCTGGTACCAGATTTCCAGCGCCGATCGCATGATTGCGCCGGAGAACCAGGAGCGGATG 
GCCGCGCGGATCGCACCGAGGAAGATCGTCACCCTCGATGCCAGCCACGCGTCACTGGCCTCGCGAGCGAAG 
GAAGTAGCGGCGCTGATCGACGAGGCCGCCGTGGCCACCGCCCACTAG