ViewGene
Locus Name:
GeneID:
Location:

GeneID:3448
TrivialName: PA14_72520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72520
PAO1 Ortholog Locus:PA5496
Sequence Length:690
Protein Length:229
Start: 6462093
Stop: 6461404
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08881.1|AE004962_5 (AE004962) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
ATGTCAGCAGTCAAGATCACGCAGAAGATCAAGGGCTTCAAGGTCGTCAACGAAGCCGAGGAGCAGGCCCTT
GCCGCCGCCGCGGAAGCCGCGTCGGTGGTGCAGATGGACGAGACCCTGGAGCGCCCGGATACCCTGATCGGC
GCCACCTACAAGATCAAGTCGCCGCTGTTCGAGCACGCGCTCTACGTGACCATCAACGACATGGTCCTCAAT
GCGGGCACGGCGCACGAGCAGCGGCGTCCCTTCGAGATCTTCATCAACTCGAAGAACATGGATCATTTCCAG
TGGATCGTCGCACTTACCCGCATCATGTCCGCGGTTTTCCGCAAGGGCGGCGACTGCACCTTCCTTGTCGAG
GAACTCAAGGCGGTATTCGACCCGCGCGGGGGCTACCTGAAGAAAGGCGGCATCTACATGCCCTCCATCGTC
GCCGAGATCGGCGGCGTGCTGGAGCGCCACCTGACGGCCATCGGCCTGTTGCGTGGCCCTGAACTGGACGAG
GAACAGCGTCTTTTCCTCGCGGAAAAACGCGCCGCCTACGAGGCCGCCCAGGGCACCAGCAAGGTCGAGCCG
GGCGAAGGCTTCCCCGCCGGCGCGCAACTGTGCGGCAAGTGCAACAGCATGGCGGTGGTACAGATGGACGGC
TGCGCCACCTGCCTCAACTGCGGACACTCGAAATGTGGGTGA
Translation:
MSAVKITQKIKGFKVVNEAEEQALAAAAEAASVVQMDETLERPDTLIGATYKIKSPLFEHALYVTINDMVLN
AGTAHEQRRPFEIFINSKNMDHFQWIVALTRIMSAVFRKGGDCTFLVEELKAVFDPRGGYLKKGGIYMPSIV
AEIGGVLERHLTAIGLLRGPELDEEQRLFLAEKRAAYEAAQGTSKVEPGEGFPAGAQLCGKCNSMAVVQMDG
CATCLNCGHSKCG*
AnnotationID:3456GeneID:3448
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5496
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33251




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3448_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3448
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5504
                           PA5496_tr
                           translation of PA5496
                           229
                           99.99
                           99.99
                           0
                           1182.0
     

     
     
153608
                           gb|AAG08881.1|AE004962_5
                           (AE004962) hypothetical protein PA5496 [Pseudomonas aeruginosa PAO1]
                           229
                           99.99
                           99.99
                           0
                           1182.0
     

     






      

          
GC ORFID: 46450How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5496Glimmer Score: 

          
Start: 5725782Stop: 5725093

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5496 translation of PA5496Homolog Bit Score 459.0

          
Other Homologs:  t_PA5496 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGCAGTCAAGATCACGCAGAAGATCAAGGGCTTCAAGGTCGTCAACGAAGCCGAGGAGCAGGCCCTT 
GCCGCCGCCGCGGAAGCCGCGTCGGTGGTGCAGATGGACGAGACCCTGGAGCGCCCGGATACCCTGATCGGC 
GCCACCTACAAGATCAAGTCGCCGCTGTTCGAGCACGCGCTCTACGTGACCATCAACGACATGGTCCTCAAT 
GCGGGCACGGCGCACGAGCAGCGGCGTCCCTTCGAGATCTTCATCAACTCGAAGAACATGGATCATTTCCAG 
TGGATCGTCGCACTTACCCGCATCATGTCCGCGGTTTTCCGCAAGGGCGGCGACTGCACCTTCCTTGTCGAG 
GAACTCAAGGCGGTATTCGACCCGCGCGGGGGCTACCTGAAGAAAGGCGGCATCTACATGCCCTCCATCGTC 
GCCGAGATCGGCGGCGTGCTGGAGCGCCACCTGACGGCCATCGGCCTGTTGCGTGGCCCTGAACTGGACGAG 
GAACAGCGTCTTTTCCTCGCGGAAAAACGCGCCGCCTACGAGGCCGCCCAGGGCACCAGCAAGGTCGAGCCG 
GGCGAAGGCTTCCCCGCCGGCGCGCAACTGTGCGGCAAGTGCAACAGCATGGCGGTGGTACAGATGGACGGC 
TGCGCCACCTGCCTCAACTGCGGACACTCGAAATGTGGGTGA