ViewGene
Locus Name:
GeneID:
Location:

GeneID:3447
TrivialName: PA14_64930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64930
PAO1 Ortholog Locus:PA4916
Sequence Length:696
Protein Length:231
Start: 5788462
Stop: 5787767
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08301.1|AE004904_9 (AE004904) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/231 (100%), Positives = 231/231 (100%)
Sequence:
ATGAGTTCAGCGGAAGTATTGGCCAGCGTGGATATCGTGGCGTTGCGCCTGAACCCCGGGCACGGACTGGAG
CTGTTGCTGATCCGCCGCGCCCAGGCGCCTTTCGCCGGCCAGTGGGCCTTGCCCGGCGTGCTGGTCAACGGC
CGCAGCGCCGACCACAGCCTCGACGACGCGGCGGTGCGCGCCCTGCGCGACAAGGCGCGGCTGGAGCCGGCC
TACATCGAGCAGGTGGCCACGGTCGGCAACGCGGTACGTGACCCGCGCGGCTGGTCGCTGAGCGTGTTCTAC
CTGGTGCTGGTCGGCCCGGACACCCAGGTGGAGGACGACGACCTCGACTTCGTGCCGCTGCGCGACGTTCGC
AGCGAGCGCTTCGCCCTGCCGTTCGACCACGCCCAACTGGTACAGCAGGCCTGCGAGCGCCTGGCGAGCAAG
TCGGTGTACAGCGCCCTGCCGTTGTTCCTGCTGGCGCCGCGCTTCACCGTGGCCGAGGCGCTGAAGGCTTTC
GAGTGCGCCATCGGCCAGGAAGTCCAGCATTCCAGCCTGCGCGGCCGCCTGGAGCGGATGAAGGAGGCTGGC
TGGGTCGAGGACACCGGCGAACGCCAGCGTCCGCCCATGGGGCGCCCGCAACACGTCCTGCATTTCACCCCG
AAGCCGGGCGGCGCCTTCGTTTTCGACCGCAGCCTGCTGGCGTCCTGA
Translation:
MSSAEVLASVDIVALRLNPGHGLELLLIRRAQAPFAGQWALPGVLVNGRSADHSLDDAAVRALRDKARLEPA
YIEQVATVGNAVRDPRGWSLSVFYLVLVGPDTQVEDDDLDFVPLRDVRSERFALPFDHAQLVQQACERLASK
SVYSALPLFLLAPRFTVAEALKAFECAIGQEVQHSSLRGRLERMKEAGWVEDTGERQRPPMGRPQHVLHFTP
KPGGAFVFDRSLLAS*
AnnotationID:3455GeneID:3447
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:20
Gene Name:
Confidence Code:3
GeneProduct:putative ADP-ribose pyrophosphatase
Cell Localization:()
Synonyms:PA4916
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1051, COG1051, ADP-ribose pyrophosphatase 
[Nucleotide transport and metabolism]
CD-Length = 145 residues,  86.9% aligned
Score = 83.2 bits (205), Expect = 2e-17
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 8/129 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6897




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35104




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3447_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3447
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5503
                           PA4916_tr
                           translation of PA4916
                           231
                           99.99
                           99.99
                           0
                           1180.0
     

     
     
153607
                           gb|AAG08301.1|AE004904_9
                           (AE004904) hypothetical protein PA4916 [Pseudomonas aeruginosa PAO1]
                           231
                           99.99
                           99.99
                           0
                           1180.0
     

     






      

          
GC ORFID: 46449How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4916Glimmer Score: 

          
Start: 5052143Stop: 5051448

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4916 translation of PA4916Homolog Bit Score 459.0

          
Other Homologs:  t_PA4916 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTCAGCGGAAGTATTGGCCAGCGTGGATATCGTGGCGTTGCGCCTGAACCCCGGGCACGGACTGGAG 
CTGTTGCTGATCCGCCGCGCCCAGGCGCCTTTCGCCGGCCAGTGGGCCTTGCCCGGCGTGCTGGTCAACGGC 
CGCAGCGCCGACCACAGCCTCGACGACGCGGCGGTGCGCGCCCTGCGCGACAAGGCGCGGCTGGAGCCGGCC 
TACATCGAGCAGGTGGCCACGGTCGGCAACGCGGTACGTGACCCGCGCGGCTGGTCGCTGAGCGTGTTCTAC 
CTGGTGCTGGTCGGCCCGGACACCCAGGTGGAGGACGACGACCTCGACTTCGTGCCGCTGCGCGACGTTCGC 
AGCGAGCGCTTCGCCCTGCCGTTCGACCACGCCCAACTGGTACAGCAGGCCTGCGAGCGCCTGGCGAGCAAG 
TCGGTGTACAGCGCCCTGCCGTTGTTCCTGCTGGCGCCGCGCTTCACCGTGGCCGAGGCGCTGAAGGCTTTC 
GAGTGCGCCATCGGCCAGGAAGTCCAGCATTCCAGCCTGCGCGGCCGCCTGGAGCGGATGAAGGAGGCTGGC 
TGGGTCGAGGACACCGGCGAACGCCAGCGTCCGCCCATGGGGCGCCCGCAACACGTCCTGCATTTCACCCCG 
AAGCCGGGCGGCGCCTTCGTTTTCGACCGCAGCCTGCTGGCGTCCTGA