ViewGene

Locus Name:
GeneID:
Location:

GeneID:3446
TrivialName: PA14_61980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61980
PAO1 Ortholog Locus:PA4685
Sequence Length:696
Protein Length:231
Start: 5525979
Stop: 5526674
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08072.1|AE004882_3 (AE004882) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/231 (100%), Positives = 231/231 (100%)
Sequence:
ATGCATCTTGATCTCTCCGAACTGACCCAGCTCGCGCCGATCTTCCGCGAGCTGTTCAAGGGCTACCACATC
AGCCACCGCGACCCCGAGCTGTACACCCAGCTGTCCTCGCACCAGGACCAGTACCGCGGCCTGTTCCGCGCC
ATGGGCTTCGAGCTGGTCTGCGATACCCGCGGCTTCTACTACTTCGTCCCGGAGCAGGTCGGCGCCCAGGTG
AACAAGACCGCCCAACGCCTGGCGCTGTTCACCTTCATCCTCGTCGAACACCTCGCCGACCAGGGCCGCGAC
CCGCTGTCCGTGCTGGACGGCGGCAGCATCGGCCGCGAAGAGCTGCCGCCGCTGCTGGAGAAATACCGCGAC
CTGTTCCTCCAGGCCGAGGTGCAGACCCAGGAAGAACTGGAAGAGAAAGTCATGCGCCGCCTGACCCAGCTC
GGCTTCGCCTCCGAGGACAGCGGCGTGTACCGCTTCATGCCGCCGATGCACCGTTTCCTCGACGTCTGCCTG
TCGGTGCAGCAGGACCGCAACCTGTCCGCCAGCCTGCACGCCGACCTGCCGTTGCAGACGCCGGTGCTGGTC
GATGACGGCGAGATCGAACCGCTGATGGCCAGCGACGAAGAATTGTCCGAAGAGAGCGAGGAAGACGCCCTC
GCCCGCGCCATCGCCGAAGAACACGCGCAACAGGAGGCTGACGCATGA
Translation:
MHLDLSELTQLAPIFRELFKGYHISHRDPELYTQLSSHQDQYRGLFRAMGFELVCDTRGFYYFVPEQVGAQV
NKTAQRLALFTFILVEHLADQGRDPLSVLDGGSIGREELPPLLEKYRDLFLQAEVQTQEELEEKVMRRLTQL
GFASEDSGVYRFMPPMHRFLDVCLSVQQDRNLSASLHADLPLQTPVLVDDGEIEPLMASDEELSEESEEDAL
ARAIAEEHAQQEADA*
AnnotationID:3454GeneID:3446
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4685
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6895
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24037
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3446

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5502 PA4685_tr translation of PA4685 231 99.99 99.99 0 1182.0
153604 gb|AAG08072.1|AE004882_3 (AE004882) hypothetical protein PA4685 [Pseudomonas aeruginosa PAO1] 231 99.99 99.99 0 1182.0
153605 gb|AAO54523.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 236 77.54 88.55 6 950.0
153606 gb|AAN66319.1|AE016260_5 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 237 75.52 86.91 8 926.0
GC ORFID: 46448How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4685Glimmer Score:
Start: 4789659Stop: 4790354
Length: 696
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4685 translation of PA4685Homolog Bit Score 459.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5159 (ORF: BLASTX 367.0), t_PA4685 (ORF: GLIMMER)
GC ORF Sequence
ATGCATCTTGATCTCTCCGAACTGACCCAGCTCGCGCCGATCTTCCGCGAGCTGTTCAAGGGCTACCACATC
AGCCACCGCGACCCCGAGCTGTACACCCAGCTGTCCTCGCACCAGGACCAGTACCGCGGCCTGTTCCGCGCC
ATGGGCTTCGAGCTGGTCTGCGATACCCGCGGCTTCTACTACTTCGTCCCGGAGCAGGTCGGCGCCCAGGTG
AACAAGACCGCCCAACGCCTGGCGCTGTTCACCTTCATCCTCGTCGAACACCTCGCCGACCAGGGCCGCGAC
CCGCTGTCCGTGCTGGACGGCGGCAGCATCGGCCGCGAAGAGCTGCCGCCGCTGCTGGAGAAATACCGCGAC
CTGTTCCTCCAGGCCGAGGTGCAGACCCAGGAAGAACTGGAAGAGAAAGTCATGCGCCGCCTGACCCAGCTC
GGCTTCGCCTCCGAGGACAGCGGCGTGTACCGCTTCATGCCGCCGATGCACCGTTTCCTCGACGTCTGCCTG
TCGGTGCAGCAGGACCGCAACCTGTCCGCCAGCCTGCACGCCGACCTGCCGTTGCAGACGCCGGTGCTGGTC
GATGACGGCGAGATCGAACCGCTGATGGCCAGCGACGAAGAATTGTCCGAAGAGAGCGAGGAAGACGCCCTC
GCCCGCGCCATCGCCGAAGAACACGCGCAACAGGAGGCTGACGCATGA