ViewGene
Locus Name:
GeneID:
Location:

GeneID:3445
TrivialName: PA14_10130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10130
PAO1 Ortholog Locus:PA4162
Sequence Length:717
Protein Length:238
Start: 869711
Stop: 870427
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07549.1|AE004832_9 (AE004832) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 237/238 (99%), Positives = 237/238 (99%)
Sequence:
ATGACGAATCATCGTACCGCGCTGGTCACCGGCGCCACCCGTGGCATCGGCCTGGCCCTGGCCAGGCGCTTG
GCGGCCTCCGGCTGGCGCGTAGTGGGCATCGCCCGCCATGCCAGCGACGACTTTCCTGGACGTCTGCTGTGC
TGCGACCTGGCCGATCCTGCGCAAACCGCCGAGACGCTGCGCGGATTGCTCTCGGAAAGCGCCGTGGATGCG
TTGGTCAACAACGCCGGGATCGCCCTGCCGCAAAGCCTGGAGAACCTCGACCTGGCCGCTCTGCAACAGGTC
TTCGACCTCAACGTACGGGTCGCCGTGCAGCTTGCCCAGGCCTGCCTGCCGGGGCTCAAACGTTCGCCGGCG
GGCCGCATCGTCAACCTGTGCAGCCGGGCGATCCACGGCGCCCGCGAACGCACCGCCTACGCCGCGGCGAAG
AGCGCGCTGGTCGGGGTGACTCGCACCTGGGCGCTGGAGCTGGCGCCGCTGGGCATCACGGTCAACGCGGTG
GCGCCCGGGCCGATCGAGACCGAACTGTTCCGCCAGACTCGCCCGGTCGGCGGCGAGGAGGAGCGGCGGATT
CTCTCGACCATCCCCATGCAGCGGCTCGGGCGGCCGGACGAAGTGGCCGCGCTGATCGAGTTCCTGCTCAGC
GAGGGCGCTTCGTTCGTCACCGGCCAGGTGATCGGCGTCGACGGCGGTGGCAGCCTGGGCGGTCGTTGA
Translation:
MTNHRTALVTGATRGIGLALARRLAASGWRVVGIARHASDDFPGRLLCCDLADPAQTAETLRGLLSESAVDA
LVNNAGIALPQSLENLDLAALQQVFDLNVRVAVQLAQACLPGLKRSPAGRIVNLCSRAIHGARERTAYAAAK
SALVGVTRTWALELAPLGITVNAVAPGPIETELFRQTRPVGGEEERRILSTIPMQRLGRPDEVAALIEFLLS
EGASFVTGQVIGVDGGGSLGGR*
AnnotationID:3453GeneID:3445
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 06:06:53
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA4162
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33762.1| (BX640447) probable short-chain dehydrogenase [Bordetella
           bronchiseptica]
          Length = 238

 Score =  278 bits (710), Expect = 3e-74
 Identities = 144/234 (61%), Positives = 175/234 (74%), Gaps = 1/234 (0%)

>emb|CAE37138.1| (BX640428) probable short-chain dehydrogenase [Bordetella
           parapertussis]
          Length = 230

 Score =  253 bits (645), Expect = 9e-67
 Identities = 132/221 (59%), Positives = 162/221 (73%), Gaps = 1/221 (0%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues,  99.6% aligned
Score =  169 bits (429), Expect = 3e-43
Identities = 98/246 (39%), Positives = 137/246 (55%), Gaps = 20/246 (8%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  98.8% aligned
Score =  155 bits (392), Expect = 5e-39
Identities = 103/251 (41%), Positives = 139/251 (55%), Gaps = 22/251 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6893




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24035




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36892




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3445_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3445
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5501
                           PA4162_tr
                           translation of PA4162
                           238
                           99.57
                           99.57
                           0
                           1182.0
     

     
     
153586
                           gb|AAG07549.1|AE004832_9
                           (AE004832) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           238
                           99.57
                           99.57
                           0
                           1182.0
     

     
     
153587
                           emb|CAE33762.1|
                           (BX640447) probable short-chain dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           239
                           60.25
                           73.22
                           2
                           710.0
     

     
     
153588
                           emb|CAE41518.1|
                           (BX640414) probable short-chain dehydrogenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           239
                           60.25
                           73.22
                           2
                           710.0
     

     
     
153589
                           emb|CAE37138.1|
                           (BX640428) probable short-chain dehydrogenase [Bordetella parapertussis]
                           244
                           54.91
                           67.62
                           20
                           645.0
     

     






      

          
GC ORFID: 46447How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4162Glimmer Score: 

          
Start: 4084226Stop: 4083510

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4162 translation of PA4162Homolog Bit Score 459.0

          
Other Homologs:  t_PA4162 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGAATCATCGTACCGCGCTGGTCACCGGCGCCACCCGTGGCATCGGCCTGGCCCTGGCCAGGCGCTTG 
GCGGCCTCCGGCTGGCGCGTAGTGGGCATCGCCCGCCATGCCAGCGACGACTTTCCTGGACGTCTGCTGTGC 
TGCGACCTGGCCGATCCTGCGCAAACCGCCGAGACGCTGCGCGGATTGCTCTCGGAAAGCGCCGTGGATGCG 
TTGGTCAACAACGCCGGGATCGCCCTGCCGCAAAGCCTGGAGAACCTCGACCTGGCCGCTCTGCAACAGGTC 
TTCGACCTCAACGTACGGGTCGCCGTGCAGCTTGCCCAGGCCTGCCTGCCGGGGCTCAAACGTTCGCCGGCG 
GGCCGCATCGTCAACCTGTGCAGCCGGGCGATCCACGGCGCCCGCGAACGCACCGCCTACGCCGCGGCGAAG 
AGCGCGCTGGTCGGGGTGACTCGCACCTGGGCGCTGGAGCTGGCGCCGCTGGGCATCACGGTCAACGCGGTG 
GCGCCCGGGCCGATCGAGACCGAACTGTTCCGCCAGACTCGCCCGGTCGGCGGCGAGGAGGAGCGGCGGATT 
CTCTCGACCATCCCCATGCAGCGGCTCGGGCGGCCGGACGAAGTGGCCGCGCTGATCGAGTTCCTGCTCAGC 
GAGGGCGCTTCGTTCGTCACCGGCCAGGTGATCGGCGTCGACGGCGGTGGCAGCCTGGGCGGTCGTTGA