ViewGene
Locus Name:
GeneID:
Location:

GeneID:3443
TrivialName: PA14_19640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19640
PAO1 Ortholog Locus:PA3437
Sequence Length:705
Protein Length:234
Start: 1695997
Stop: 1695293
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06825.1|AE004764_11 (AE004764) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 232/234 (99%), Positives = 233/234 (99%)
Sequence:
ATGGCGACAGCCCCGATCCTGATCACCGGCGCCAGCCAGCGTGTCGGCCTGCATTGCGCCCGCCGCCTGCTG
GCCGACGGCGAGTCGGTGATCGTCAGCTACCGCAGCGAACGCCCGGCGCTGGACGAACTGCGCCAGGCCGGC
GCGCTGACCCTGCACGCCGACTTCGCCAGCGAGGCCGGCATCTTCGCCTTCATCGGGTCCCTCCGGCAGCAT
ACCGACAGCCTGCGAGCGATCGTCCACAACGCCTCGGACTGGGTCGCCGAGACGCCCGGCCACGAAGCCGAG
GCGTTCCAGCAACTGTTCTGCGTGCACATGCTCGCGCCCTACCTGATCAACCTGCACTGCGCCGAGCTGCTG
GAACGCTCGCAGCCCGCCGACATCGTCCACCTCACCGACGACGTGGCGCGCAAGGGCAGCGCCCGGCGCATC
GCCTACTGCGCGAGCAAGGCCGGGCTGGACAACCTGACCCTGTCGTTCGCCGCGCGCTTCGCGCCGAGGATC
AAGGTCAACGCCATTTCACCGGCGCTGGTGATGTTCAACGACGGGGACGACGCCGAATACCGCGCCCGCACC
CTGGCGAAATCCGCCCTCGGCATCGAGCCGGGGCCGGAAGTCATCTACCAGAGCCTTCGCTACCTGTTGGAC
AACCCCTACGTCACCGGGACCACCCTGACCGTGAACGGCGGCCGCCACGTCAAGTGA
Translation:
MATAPILITGASQRVGLHCARRLLADGESVIVSYRSERPALDELRQAGALTLHADFASEAGIFAFIGSLRQH
TDSLRAIVHNASDWVAETPGHEAEAFQQLFCVHMLAPYLINLHCAELLERSQPADIVHLTDDVARKGSARRI
AYCASKAGLDNLTLSFAARFAPRIKVNAISPALVMFNDGDDAEYRARTLAKSALGIEPGPEVIYQSLRYLLD
NPYVTGTTLTVNGGRHVK*
AnnotationID:3451GeneID:3443
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 10:10:40
Gene Name:
Confidence Code:3
GeneProduct:oxidoreductase, short chain dehydrogenase/reductase
Cell Localization:()
Synonyms:ydgB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54710.1| (AE016860) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 236

 Score =  342 bits (878), Expect = 8e-94
 Identities = 170/234 (72%), Positives = 196/234 (83%)

>gb|AAN80458.1|AE016761_33 (AE016761) Hypothetical oxidoreductase ydgB [Escherichia coli
           CFT073]
          Length = 240

 Score =  201 bits (510), Expect = 4e-51
 Identities = 106/234 (45%), Positives = 151/234 (64%), Gaps = 5/234 (2%)

>gb|AAN43210.1|AE015184_2 (AE015184) putative oxidoreductase [Shigella flexneri 2a str. 301]
          Length = 240

 Score =  200 bits (509), Expect = 5e-51
 Identities = 105/234 (44%), Positives = 150/234 (64%), Gaps = 5/234 (2%)






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  99.6% aligned
Score =  100 bits (251), Expect = 1e-22
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 21/246 (8%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  96.8% aligned
Score =  101 bits (251), Expect = 1e-22







   
Genomic Context:






   
Comment:


















    ReferenceID:6889




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32131




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3443_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3443
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5499
                           PA3437_tr
                           translation of PA3437
                           234
                           99.14
                           99.57
                           0
                           1180.0
     

     
     
153535
                           gb|AAG06825.1|AE004764_11
                           (AE004764) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           234
                           99.14
                           99.57
                           0
                           1180.0
     

     
     
153536
                           gb|AAO54710.1|
                           (AE016860) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           72.03
                           83.05
                           2
                           878.0
     

     
     
153537
                           gb|AAN53848.1|AE015522_3
                           (AE015522) oxidoreductase, short chain dehydrogenase/reductase family [Shewanella oneidensis MR-1]
                           241
                           48.13
                           64.73
                           9
                           545.0
     

     
     
153538
                           gb|AAN80458.1|AE016761_33
                           (AE016761) Hypothetical oxidoreductase ydgB [Escherichia coli CFT073]
                           243
                           44.85
                           62.96
                           12
                           518.0
     

     






      

          
GC ORFID: 46445How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3437Glimmer Score: 

          
Start: 3257935Stop: 3258639

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3437 translation of PA3437Homolog Bit Score 459.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5033 (ORF: BLASTX 337.0), t_PA3437 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACAGCCCCGATCCTGATCACCGGCGCCAGCCAGCGTGTCGGCCTGCATTGCGCCCGCCGCCTGCTG 
GCCGACGGCGAGTCGGTGATCGTCAGCTACCGCAGCGAACGCCCGGCGCTGGACGAACTGCGCCAGGCCGGC 
GCGCTGACCCTGCACGCCGACTTCGCCAGCGAGGCCGGCATCTTCGCCTTCATCGGGTCCCTCCGGCAGCAT 
ACCGACAGCCTGCGAGCGATCGTCCACAACGCCTCGGACTGGGTCGCCGAGACGCCCGGCCACGAAGCCGAG 
GCGTTCCAGCAACTGTTCTGCGTGCACATGCTCGCGCCCTACCTGATCAACCTGCACTGCGCCGAGCTGCTG 
GAACGCTCGCAGCCCGCCGACATCGTCCACCTCACCGACGACGTGGCGCGCAAGGGCAGCGCCCGGCGCATC 
GCCTACTGCGCGAGCAAGGCCGGGCTGGACAACCTGACCCTGTCGTTCGCCGCGCGCTTCGCGCCGAGGATC 
AAGGTCAACGCCATTTCACCGGCGCTGGTGATGTTCAACGACGGGGACGACGCCGAATACCGCGCCCGCACC 
CTGGCGAAATCCGCCCTCGGCATCGAGCCGGGGCCGGAAGTCATCTACCAGAGCCTTCGCTACCTGTTGGAC 
AACCCCTACGTCACCGGGACCACCCTGACCGTGAACGGCGGCCGCCACGTCAAGTGA